오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Sars-CoV-2의 구조가 급속하게 결정되어, EMDB 및 PDB에 등록되고 있습니다. 이러한 정보는 구조 기반 신약 개발의 기점이 될 수 있습니다. Cryo-EM 커뮤니티에서는 이러한 데이터를 확인하고 다시 분석 할 수 있도록 다음과 같이 긴급히 부탁 드리고 있습니다. a) SARS-CoV-2에 대한 데이터를 EMDB (혹은 PDB)에 등록 하셨다면, 2D 이미지 데이터를 반드시 EMPIAR에 등록해 주십시오. b) SARS-CoV-2에 관한 데이터를 수집하고 구조를 등록하지 않으신 분은, Cryo-EM 커뮤니티가 이미지 처리 및 모델 구축을 지원할 수 있도록 EMPIAR에 이미지 데이터를 등록 하실 것을 고려해 주십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2023-12-11 | SpCas9 bound to 14 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
2.1 TB | 3.49 Å | |
2023-12-11 | SpCas9 bound to 16 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.3 TB | 3.12 Å | |
2023-12-11 | SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å | |
2023-12-11 | SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å | |
2023-12-11 | SpCas9 bound to 8 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.4 TB | 4.14 Å | |
2023-12-11 | Single particle movie data of NAIP5 [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Cao J, Paidmuddala B, Zhang L [Pubmed: 36604500] [DOI: 10.1038/s41594-022-00889-2] |
19.4 TB | 3.3 - 3.6 Å | |
2023-12-04 | Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA [11827 multi-frame micrographs composed of 50 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.0 TB | 2.07 Å | |
2023-12-04 | Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric and asymmetric conformations [multiple data sets in MRC format] | Xu X, Ben-Hail D, des Georges A, Pozharski E [Pubmed: 31896582] [DOI: 10.1073/pnas.1919490117] |
704.4 GB | 2.8 - 3.1 Å | |
2023-12-04 | Structural architecture of the acidic region of the B domain of coagulation factor V [8429 micrographs in MRC format] | Mohammed BM, Basore K, Summers B, Pelc LA, Di Cera E [Pubmed: 33684942] [DOI: 10.1182/blood.2021010684] |
447.1 GB | 3.05 - 3.3 Å | |
2023-12-04 | Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum [13348 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.7 TB | 2.17 Å | |
2023-12-04 | Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with coenzyme A bound to the E2o domain [12202 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.2 TB | 2.17 Å | |
2023-12-04 | Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å | |
2023-12-04 | Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å | |
2023-12-01 | cAMP-bound SpSLC9C1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Peter MF, Rheinberger J, Paulino C [Pubmed: 37880361] [DOI: 10.1038/s41586-023-06629-w] |
4.8 TB | 3.3 - 3.74 Å | |
2023-11-14 | Ligand-free SpSLC9C1 in lipid nanodiscs [11299 multi-frame micrographs composed of 76 frames each in TIFF format] | Kalienkova V, Peter MF, Rheinberger J, Paulino C [Pubmed: 37880361] [DOI: 10.1038/s41586-023-06629-w] |
3.3 TB | 3.21 - 3.4 Å | |
2023-11-14 | Ligand-free SpSLC9C1 in detergent [multiple data sets in TIFF format] | Kalienkova V, Peter MF, Rheinberger J, Paulino C [Pubmed: 37880361] [DOI: 10.1038/s41586-023-06629-w] |
2.1 TB | 3.05 - 3.3 Å | |
2023-11-14 | cGMP-bound SpSLC9C1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Peter MF, Rheinberger J, Paulino C [Pubmed: 37880361] [DOI: 10.1038/s41586-023-06629-w] |
1.6 TB | 3.22 - 3.26 Å | |
2023-11-13 | Test subset: In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [18 tilt series in MRC format] | Kelley R, Zhang X, Obr M, Khavnekar S, Righetto R, Waltz F, Wietrzynski W, Michael A, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
293.7 GB | — | |
2023-11-07 | A molecular network of conserved factors keeps ribosomes dormant in the egg [multiple data sets in MRC, MRCS and TIFF formats] | Leesch F, Lorenzo-Orts L, Grishkovskaya I, Kandolf S, Belacic K, Meinhart A, Haselbach D, Pauli A [Pubmed: 36653451] [DOI: 10.1038/s41586-022-05623-y] |
32.5 TB | 2.3 - 3.2 Å | |
2023-11-07 | Tau filaments from the cellular fraction of Alzheimer's disease patient brain [12117 multi-frame micrographs composed of 40 frames each in TIFF format] | Ryskeldi-Falcon BR-F, Behr TSB [Pubmed: 37163117] [DOI: 10.1101/2023.04.30.537820] |
1.9 TB | 3.27 Å | |
2023-11-07 | The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase Wzz form a complex in vivo and in vitro [2351 multi-frame micrographs composed of 20 frames each in MRC format] | Weckener M, Woodward LS, Clarke BR, Liu H, Ward PN, Le Bas A, Bhella D, Whitfield C, Naismith JH [Pubmed: 36944376] [DOI: 10.1098/rsob.220373] |
273.6 GB | 3.6 Å | |
2023-11-07 | Single particle cryo-EM dataset of extended cowpea chlorotic mottle virus in plunge-frozen vitrified ice [multiple data sets in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
5.1 TB | 3.9 Å | |
2023-11-07 | Single particle cryo-EM dataset of extended cowpea chlorotic mottle virus at pH 7.6 in laser-melted and revitrified ice [6200 multi-frame micrographs composed of 651 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
980.5 GB | 4.3 Å | |
2023-11-07 | Single particle cryo-EM dataset of extended cowpea chlorotic mottle virus at pH 7.6 in plunge-frozen vitrified ice [3383 multi-frame micrographs composed of 1274 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
1.0 TB | 4.1 Å | |
2023-11-06 | Single particle cryo-EM structure of RIG-I:RNA:Riplet ternary complex [3420 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang W, Pyle AM [DOI: 10.1038/s41467-023-42982-0] |
1.5 TB | — |