大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2023-06-29 | E. coli 50S ribosome bound to streptogramin A analog 3146 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.1 TB | 2.38 Å | |
2023-10-10 | EM ladder: four-species cryoEM protein mix for workflow and algorithm benchmarking: Apoferritin, beta-galactosidase, PP7 VLPs and TMV [1862 micrographs in MRC format] | Bobe D, Eng E, Kopylov M | 98.7 GB | 2.38 - 3.36 Å | |
2023-08-18 | Single particle cryo-EM dataset of Mus musculus mitochondrial complex I [2674 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Chung I, Bridges HR, Agip AA, Hirst J [Pubmed: 37531432] [DOI: 10.1126/sciadv.adi1359] |
1.1 TB | 2.39 Å | |
2024-03-18 | Mycobacterium phage Che8 mutant capsid (gene 110 deletion) [8118 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM, White SJ | 2.2 TB | 2.39 Å | |
2023-08-18 | Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 2) [33336 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
5.3 TB | 2.39 Å | |
2023-08-18 | Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 3) [36507 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
5.7 TB | 2.39 Å | |
2023-09-22 | Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 1) [91457 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
14.5 TB | 2.39 Å | |
2023-06-02 | Mycobacterium phage Patience [8640 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM | 2.2 TB | 2.39 Å | |
2024-03-18 | Ex vivo murine AApoAII amyloid fibril [3083 multi-frame micrographs composed of 40 frames each in TIFF format] | Andreotti S, Schmidt M, Fändrich M [Pubmed: 38199491] [DOI: 10.1016/j.jmb.2024.168441] |
510.6 GB | 2.4 - 2.6 Å | |
2022-11-21 | Micrographs of Rigid-Rod Aromatics BP-NBD [5610 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.2 TB | 2.4 Å | |
2022-02-24 | Affinity-purified PoxtA in complex with 70S ribosomes from Enterococcus faecalis [3640 multi-frame micrographs composed of 40 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 35387982] [DOI: 10.1038/s41467-022-29274-9] |
321.8 GB | 2.4 Å | |
2024-01-15 | CryoEM movies of nitrogenase (MoFeP + FeP) from Azotobacter vinelandii under catalytic turnover conditions with inhibitor BeFx [multiple data sets in MRC format] | Rutledge HL, Cook BD, Nguyen HPM, Tezcan FA, Herzik Jr MA [Pubmed: 35901182] [DOI: 10.1126/science.abq7641] |
1.7 TB | 2.4 Å | |
2022-08-08 | Architecture of the human erythrocyte ankyrin-1 complex [multiple data sets in TIFF, MRC and MRCS formats] | Vallese F, Clarke OB [Pubmed: 35835865] [DOI: 10.1038/s41594-022-00792-w] |
5.2 TB | 2.4 Å | |
2024-02-28 | ASSFVRIa-bound Malacoceros FaNaC1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
1.3 TB | 2.4 Å | |
2022-08-15 | Single Particle CryoEM of inactive hNTSR1 bound to Nb6 and SR antagonist [5818 multi-frame micrographs composed of 71 frames each in TIFF format] | Robertson MJ, Skiniotis G [Pubmed: 36396979] [DOI: 10.1038/s41594-022-00859-8] |
3.3 TB | 2.4 Å | |
2021-08-13 | Human apo ferritin frozen on TEM grid with Amorphous nickel titanium alloy supporting film [426 multi-frame micrographs composed of 32 frames each in TIFF format] | Huang X, Zhang L, Wen Z, Chen H, Li S, Ji G, Yin CC, Sun F [Pubmed: 32758492] [DOI: 10.1016/j.pbiomolbio.2020.07.009] |
134.5 GB | 2.4 Å | |
2022-01-24 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan [multiple data sets in TIFF and MRC formats] | van der Stel AX, Gordon ER, Sengupta A, Martínez AK, Klepacki D, Perry TN, Herrero Del Valle A, Vázquez-Laslop N, Sachs MS, Cruz-Vera LR, Innis CA [Pubmed: 34504068] [DOI: 10.1038/s41467-021-25663-8] |
3.7 TB | 2.4 - 2.9 Å | |
2018-06-13 | Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å | |
2022-03-01 | Cryo electron microscopy of single particles of the Haliangium ochraceum Encapsulin:encapsulated ferritin encapsulin nano compartment [8109 multi-frame micrographs composed of 40 frames each in TIFF format] | Ross J, Baslé A, Clarke DJ, Marles-Wright J [Pubmed: 35080974] [DOI: 10.1126/sciadv.abj4461] |
1.7 TB | 2.4 - 3.5 Å | |
2021-06-04 | Cryo-EM structure of SARS-CoV-2 spike at pH 4.0 [10326 multi-frame micrographs composed of 40 frames each in TIFF format] | Tsybovsky Y, Zhou T [Pubmed: 33271067] [DOI: 10.1016/j.chom.2020.11.004] |
1.9 TB | 2.4 Å | |
2022-02-25 | Cryo-EM of Mechanosensitive Ion Channel Flycatcher1 in GDN [multiple data sets in MRC format] | Jojoa-Cruz S, Saotome K, Lee WH, Patapoutian A, Ward AB [Pubmed: 35165281] [DOI: 10.1038/s41467-022-28511-5] |
876.9 GB | 2.4 - 2.8 Å | |
2022-11-18 | Micrographs of Rigid-Rod Aromatics pBP-NBD [8261 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.7 TB | 2.4 Å | |
2024-02-13 | Cryo electron microscopy of Virus-like Particle based on PVY coat protein with T43C and D136C mutation [461 multi-frame micrographs composed of 38 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
332.6 GB | 2.41 Å | |
2022-09-13 | Cryo-EM of ADP-F-actin [multiple data sets in TIFF and MRCS formats] | Reynolds MJ, Hachicho C, Carl AG, Gong R, Alushin GM [Pubmed: 36289330] [DOI: 10.1038/s41586-022-05366-w] |
938.5 GB | 2.43 - 3.69 Å | |
2022-09-09 | Cryo-electron microscopy of human exostosin-like 3 (EXTL3) [1626 multi-frame micrographs composed of 70 frames each in MRC format] | Wilson LFL, Dendooven T, Hardwick SW, Echevarría-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P [Pubmed: 35676258] [DOI: 10.1038/s41467-022-31048-2] |
3.5 TB | 2.43 Å |