大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2015-02-23 | Electron cryo-microscopy of ATP synthase dimers from Polytomella sp. [2829 multi-frame micrographs composed of 24 frames each in MRC format] | Allegretti M, Klusch N, Mills DJ, Vonck J, Kuehlbrandt W, Davies KM [Pubmed: 25707805] [DOI: 10.1038/nature14185] |
4.1 TB | 7.0 Å | |
2020-10-16 | Tilt-series from cryo-lamellae of WT S. cerevisiae cells [multiple data sets in MRC format] | Allegretti M, Zimmerli CE, Rantos V, Wilfling F, Ronchi P, Fung HKH, Lee CW, Hagen W, Turoňová B, Karius K, Börmel M, Zhang X, Müller CW, Schwab Y, Mahamid J, Pfander B, Kosinski J, Beck M [Pubmed: 32879490] [DOI: 10.1038/s41586-020-2670-5] |
605.7 GB | 25.0 Å | |
2022-08-08 | Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain [9370 multi-frame micrographs composed of 50 frames each in TIFF format] | Altomare CG, Adelsberg DC, Carreno JM, Sapse IA, Amanat F, Ellebedy AH, Simon V, Krammer F, Bajic G [Pubmed: 35467422] [DOI: 10.1128/mbio.03580-21] |
5.1 TB | 3.6 - 3.7 Å | |
2021-04-30 | FIB-SEM of Tuwongella immobilis - a species of the Planctomycetes phylum [1 multi-frame micrographs composed of 464 frames each in TIFF format] | Andersson SGE, Odelgard A, Dyrhage K, Mahajan M, Seeger C [DOI: 10.3389/fmicb.2021.643045] |
6.7 GB | — | |
2024-03-18 | Ex vivo murine AApoAII amyloid fibril [3083 multi-frame micrographs composed of 40 frames each in TIFF format] | Andreotti S, Schmidt M, Fändrich M [Pubmed: 38199491] [DOI: 10.1016/j.jmb.2024.168441] |
510.6 GB | 2.4 - 2.6 Å | |
2023-10-17 | 3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen E. intestinalis [multiple data sets in DM4 format] | Antao NVA, Lam CKL, Davydov AD, Riggi MR, Sall JS, Petzold CP, Liang FL, Iwasa JI, Ekiert DCE, Bhabha GB [Pubmed: 37425741] [DOI: 10.1101/2023.07.02.547383] |
537.9 GB | — | |
2023-10-06 | CryoEM micrographs collected on a RAD51-ADP filament sample [9214 multi-frame micrographs composed of 50 frames each in TIFF format] | Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.5 TB | 3.6 Å | |
2023-10-13 | CryoEM micrographs collected on a RAD51-ATP-dsDNA filament sample [3850 multi-frame micrographs composed of 40 frames each in TIFF format] | Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
960.3 GB | 2.9 Å | |
2024-01-05 | CryoEM micrographs of RAD51 filaments on ssDNA bound by the BRCA2 c-terminus [12005 multi-frame micrographs composed of 38 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.8 TB | 2.9 Å | |
2023-12-12 | CryoEM micrographs of RAD51 filaments on dsDNA bound by the BRCA2 c-terminus [10167 multi-frame micrographs composed of 93 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37919288] [DOI: 10.1038/s41467-023-42830-1] |
1.5 TB | 2.83 Å | |
2019-10-30 | Cryo-EM structure of the translocator of the outer mitochondrial membrane [2057 multi-frame micrographs composed of 49 frames each in TIFF format] | Araiso Y, Tsutsumi A, Qiu J, Imai K, Shiota T, Song J, Lindau C, Wenz LS, Sakaue H, Yunoki K, Kawano S, Suzuki J, Wischnewski M, Schutze C, Ariyama H, Ando T, Becker T, Lithgow T, Wiedemann N, Pfanner N, Kikkawa M, Endo T [Pubmed: 31600774] [DOI: 10.1038/s41586-019-1680-7] |
1.9 TB | 3.81 Å | |
2021-09-24 | Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract (lot1) [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.3 TB | 3.5 - 5.5 Å | |
2021-09-24 | Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot 1 [1364 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
634.3 GB | 3.38 - 8.07 Å | |
2021-09-24 | Mono nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
749.0 GB | 5.12 Å | |
2021-09-22 | Mono nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1792 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
778.6 GB | 5.64 Å | |
2021-09-24 | Di nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
805.9 GB | 4.74 Å | |
2021-09-22 | Di nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1386 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
825.4 GB | 8.1 Å | |
2021-09-22 | Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract lot2 [1456 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
696.5 GB | 3.77 - 4.32 Å | |
2021-09-22 | Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot2 [1376 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
648.2 GB | 3.54 - 4.42 Å | |
2021-09-22 | Open linker DNA nucleosome reconstituted with GUB DNA [1576 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
777.0 GB | 4.52 Å | |
2021-09-22 | Closed linker DNA nucleosome reconstituted with GUB DNA [1320 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
624.4 GB | 3.77 Å | |
2021-09-24 | 'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.1 TB | 5.44 Å | |
2021-11-16 | The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C: CENP-A nucleosome in complex with phosphorylated CENP-C C-terminal domain (601-864) and CENP-N N-terminal domain (1-211) [8017 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.6 TB | 4.5 - 7.8 Å | |
2021-11-16 | The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C:: CENP-A nucleosome in complex with phosphorylated CENP-C C-terminal domain(601-864) [6533 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.4 TB | 6.8 Å | |
2021-11-16 | The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C:: CENP-A nucleosome in complex with CENP-C motif (655-675) and CENP-N N-terminal domain (1-211) [4630 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.3 TB | 4.2 Å |