Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-02-01 |  |
Mycobacterium phage Bobi [1915 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.2 TB | 2.5 Å |
| 2018-05-04 |  |
Benchmarking cryo-EM single particle analysis workflow [699 multi-frame micrographs composed of 33 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AR, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
37.3 GB | 2.5 - 2.8 Å |
| 2021-01-29 |  |
Single-particle cryo-EM dataset of the complex between a nucleosome and the regulatory linker of ALC1 [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S [Pubmed: 33357431] [DOI: 10.1016/j.celrep.2020.108529] |
6.8 TB | 2.5 - 3.0 Å |
| 2020-10-28 |  |
The α-synuclein hereditary mutation E46K unlocks a more stable, pathogenic fibril structure [4919 multi-frame micrographs composed of 30 frames each in TIFF format] | Boyer DR, Li B, Sun C, Fan W, Zhou K, Hughes MP, Sawaya MR, Jiang L, Eisenberg DS [Pubmed: 32015135] [DOI: 10.1073/pnas.1917914117] |
897.9 GB | 2.5 Å |
| 2020-06-29 |  |
Sub-3 Å Apoferritin Structure Determined With Full Range of Phase Shifts Using A Single Position Of Volta Phase Plate [multiple data sets in MRC and TIFF formats] | Li K [Pubmed: 30928614] [DOI: 10.1016/j.jsb.2019.03.007] |
778.8 GB | 2.51 - 2.94 Å |
| 2022-09-13 |  |
Cryo-EM of ADP-Pi-F-actin [multiple data sets in TIFF and MRCS formats] | Reynolds MJ, Hachicho C, Carl AG, Gong R, Alushin GM [Pubmed: 36289330] [DOI: 10.1038/s41586-022-05366-w] |
2.5 TB | 2.51 - 3.71 Å |
| 2023-04-13 |  |
Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
13.5 TB | 2.51 Å |
| 2023-09-25 |  |
The potassium-selective channelrhodopsin HcKCR1 and HcKCR2 in lipid nanodisc [multiple data sets in TIFF format] | Tajima S, Kim YS, Fukuda M, Nakamura S, Yamashita K, Deisseroth K [Pubmed: 37652010] [DOI: 10.1016/j.cell.2023.08.009] |
4.1 TB | 2.53 - 2.66 Å |
| 2023-06-30 |  |
E. coli 50S ribosome bound to SLC09 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 1.8 TB | 2.53 Å |
| 2023-04-11 |  |
Desulfonema ishimotonii Cas7-11 in complex with Csx29 and Csx30 [multiple data sets in TIFF format] | Strecker J, Demircioglu FE, Li D, Faure G, Wilkinson ME, Macrae RK, Zhang F [Pubmed: 36423276] [DOI: 10.1126/science.add7450] |
5.7 TB | 2.53 - 3.15 Å |
| 2024-02-06 |  |
SpCas9 bound to 18 nucleotide complementary DNA substrate in the checkpoint state [multiple data sets in EER format] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
7.7 TB | 2.54 Å |
| 2021-12-23 |  |
cryoEM structure of Gi-coupled MRGPRX2 with peptide agonist Cortistatin-14 [9765 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
2.8 TB | 2.54 Å |
| 2022-09-20 |  |
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution [1664 multi-frame micrographs composed of 62 frames each in TIFF format] | Mori T, Moriya T, Adachi N, Kawasaki M, Senda T, Abe I [Pubmed: 34728636] [DOI: 10.1038/s41467-021-26585-1] |
1.7 TB | 2.54 Å |
| 2022-05-03 |  |
Cryo-EM Structures of Glucocorticoid Receptor-Hsp90-p23 [the GR Maturation Complex], Hsp90-p23, and MBP-Hsp90-p23 [multiple data sets in MRC format] | Noddings CM, Wang RY, Agard DA [Pubmed: 34937936] [DOI: 10.1038/s41586-021-04236-1] |
494.1 GB | 2.56 - 3.63 Å |
| 2022-12-16 |  |
Amyloid fibril structure from the vascular variant of systemic AA amyloidosis [multiple data sets in TIFF format] | Banerjee S, Baur J, Daniel C, Pfeiffer PB, Hitzenberger M, Kuhn L, Wiese S, Bijzet J, Haupt C, Amann KU, Zacharias M, Hazenberg BPC, Westermark GT, Schmidt M, Fändrich M [Pubmed: 36433936] [DOI: 10.1038/s41467-022-34636-4] |
1009.8 GB | 2.56 Å |
| 2022-12-09 |  |
CryoEM structure of hM3R-miniGq in complex with Iperoxo [2858 micrographs in MRC format] | Fay J, Roth B, Zhang S [Pubmed: 36450989] [DOI: 10.1038/s41586-022-05489-0] |
250.9 GB | 2.56 Å |
| 2022-11-14 |  |
Cryo-EM structures of the translocational binary toxin complex CDTa-bound CDTb-pore [11284 multi-frame micrographs composed of 84 frames each in TIFF format] | Kawamoto A, Yamada T, Yoshida T, Sato Y, Kato T, Tsuge H [Pubmed: 36253419] [DOI: 10.1038/s41467-022-33888-4] |
3.3 TB | 2.56 - 2.64 Å |
| 2021-12-16 |  |
cryoEM structure of Gi-coupled MRGPRX2 with small molecule agonist (R)-Zinc-3573 [5759 multi-frame micrographs composed of 60 frames each in TIFF format] | Can Cao CC, Jonathan Fay JF, Bryan Roth BR [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
1.7 TB | 2.58 Å |
| 2024-04-03 |  |
Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs [24086 multi-frame micrographs composed of 65 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
11.3 TB | 2.58 Å |
| 2023-02-08 |  |
PKA-phosphorylated CPVT variant human ryanodine receptor type 2 R2474S - RyR2-R2474S [10671 multi-frame micrographs composed of 50 frames each in TIFF format] | Miotto MC, Weninger G, Dridi H, Yuan Q, Liu Y, Wronska A, Melville Z, Sittenfeld L, Reiken S, Marks AR [Pubmed: 35857850] [DOI: 10.1126/sciadv.abo1272] |
2.3 TB | 2.58 - 3.29 Å |
| 2023-06-02 |  |
f1-derived nanorods [25065 multi-frame micrographs composed of 40 frames each in TIFF format] | Conners R, McLaren MJ, Gold V [Pubmed: 37169795] [DOI: 10.1038/s41467-023-37915-w] |
9.9 TB | 2.58 - 2.97 Å |
| 2024-03-18 |  |
Unseeded Aβ(1-40) amyloid fibrils [4628 multi-frame micrographs composed of 918 frames each in EER format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
1.9 TB | 2.59 - 2.73 Å |
| 2022-01-24 |  |
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 1, frontal cortex) [22896 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Hasegawa M, Murzin AG, Kametani F, Arai M, Yoshida M, Ryskeldi-Falcon B [Pubmed: 34880495] [DOI: 10.1038/s41586-021-04199-3] |
3.9 TB | 2.59 Å |
| 2023-05-16 |  |
CryoEM of E. coli RNA polymerase Sigma N bound to mismatch DNA fragment dhsU36mm2 (-12A) [multiple data sets in TIFF, MRC and MRCS formats] | Mueller AU, Chen J, Wu M, Chiu C, Nixon BT, Campbell EA, Darst SA [Pubmed: 36972428] [DOI: 10.1073/pnas.2220874120] |
8.2 TB | 2.6 - 3.0 Å |
| 2022-07-01 |  |
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2 [8056 multi-frame micrographs composed of 31 frames each in TIFF format] | Basu RS, Sherman MB, Gagnon MG [Pubmed: 35697706] [DOI: 10.1038/s41467-022-31129-2] |
1.7 TB | 2.6 - 3.6 Å |
