The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2020-01-31 | CryoEM dataset containing multiple conformations of the asymmetric αVβ8 integrin bound to two Fabs on a holey carbon grid (minimal preferred orientations) [multiple data sets in TIFF, MRC and MRCS formats] | Campbell MG, Cheng Y [Pubmed: 31955848] [DOI: 10.1016/j.cell.2019.12.030] |
882.1 GB | 3.51 Å | |
2015-03-06 | T20S Proteasome at 2.8 Å Resolution [multiple data sets in MRC format] | Campbell M, Veesler D, Cheng A, Potter CS, Carragher B [Pubmed: 25760083] [DOI: 10.7554/eLife.06380] |
2.0 TB | 2.8 Å | |
2022-11-11 | Tilt series of SARS-CoV-2 virions, Wuhan/Alpha/Beta/Delta variants [multiple data sets in MRC format] | Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB [Pubmed: 36357779] [DOI: 10.1038/s42003-022-04183-1] |
120.5 GB | 27.75 - 44.4 Å | |
2022-08-19 | Single particle cryo-EM of the human CST•Polα/Primase (POLA1 FL) complex in a recruitment state [multiple data sets in MRC format] | Cai SW [Pubmed: 35578024] [DOI: 10.1038/s41594-022-00766-y] |
317.1 GB | 16.0 Å | |
2022-08-19 | Single particle cryo-EM of the human CST•Polα/Primase (POLA1ΔN) complex in a recruitment state [9885 micrographs in MRC format] | Cai SW [Pubmed: 35578024] [DOI: 10.1038/s41594-022-00766-y] |
869.0 GB | 4.6 Å | |
2018-05-30 | Cryo-ET of natural chromatin from Ostreococcus tauri and Saccharyomyces cerevisiae [25 class averages in MRC format] | Cai S, Song Y, Chen C, Shi J [Pubmed: 29742050] [DOI: 10.1091/mbc.E17-07-0449] |
40.1 GB | — | |
2018-10-17 | Cryo-ET reveals the macromolecular reorganization of S. pombe mitotic chromosomes in vivo [25 tilt series in MRC format] | Cai S, Chen C, Tan ZY, Huang Y, Shi J [Pubmed: 30297429] [DOI: 10.1073/pnas.1720476115] |
35.1 GB | — | |
2018-10-22 | The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin [59 tilt series in MRC format] | Cai S, Böck D, Pilhofer M, Gan L [Pubmed: 30091658] [DOI: 10.1091/mbc.E18-05-0331] |
1.9 GB | 21.0 - 24.0 Å | |
2022-04-19 | In situ architecture of the lipid transport protein VPS13C at ER-lysosomes membrane contacts [5 tilt series in MRC format] | Cai S [Pubmed: 35858323] [DOI: 10.1073/pnas.2203769119] |
29.5 GB | 47.0 Å | |
2021-11-05 | MukBEF(E1407Q)-MatP-DNA in the presence of ATP [multiple data sets in TIFF format] | Bürmann F, Löwe J [Pubmed: 34739874] [DOI: 10.1016/j.molcel.2021.10.011] |
8.5 TB | 3.1 - 13.0 Å | |
2022-11-14 | Amyloid fibril from the antimicrobial peptide aurein 3.3 [multiple data sets in TIFF and MRCS formats] | Bücker R, Seuring C, Cazey C, Veith K, Garcia-Alai M, Grünewald K, Landau M [Pubmed: 35896552] [DOI: 10.1038/s41467-022-32039-z] |
5.2 TB | 3.5 Å | |
2022-11-15 | Amyloid fibril from the antimicrobial peptide uperin 3.5 [multiple data sets in TIFF, MRC and MRCS formats] | Bücker R, Seuring C, Cazey C, Veith K, Garcia-Alai M, Grünewald K, Landau M [Pubmed: 35896552] [DOI: 10.1038/s41467-022-32039-z] |
7.4 TB | 3.0 Å | |
2021-08-13 | Serial electron diffraction from hen egg-white lysozyme [34 diffraction images in BIG DATA VIEWER HDF5 format] | Bücker R, Hogan-Lamarre P, Mehrabi P, Schulz EC [Pubmed: 32081905] [DOI: 10.1038/s41467-020-14793-0] |
17.7 GB | 1.8 Å | |
2024-02-08 | Cryo electron tomography of whole mitochondria and released crista membranes isolated from Caenorhabditis elegans [multiple data sets in MRC format] | Buzzard E, McLaren M, Gold VAM [Pubmed: 38164968] [DOI: 10.1042/BCJ20230450] |
159.0 GB | 38.6 Å | |
2020-04-14 | Cryo-electron tomography of E. coli minicells [17 multi-frame micrographs composed of 5 frames each in MRC format] | Burt A., Desfosses A., Gutsche I., Clare D. K [Pubmed: 32029744] [DOI: 10.1038/s41467-020-14350-9] |
141.7 GB | 16.0 Å | |
2020-02-18 | Cryo-EM structure of an undocked innexin-6 hemichannel in phospholipids [933 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
49.5 GB | 3.8 Å | |
2020-02-18 | Cryo-EM structure of an undocked innexin-6 hemichannel in detergent [497 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
26.4 GB | 3.8 Å | |
2020-02-18 | Structure of an undocked hemichannel of the N-terminal-deleted INX-6 in a nanodisc [300 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
15.9 GB | 3.6 Å | |
2020-08-06 | Cryo-EM Structure of GluD1-Orphan Delta Receptor Reveals a Novel Architecture in the Ionotropic Glutamate Receptor Family [3938 multi-frame micrographs composed of 40 frames each in MRC format] | Burada AP, Vinnakota R, Kumar J [Pubmed: 31925409] [DOI: 10.1038/s41594-019-0359-y] |
6.5 TB | 8.1 Å | |
2022-09-06 | Cryo-EM images of equine apo-ferritin recorded as demonstration of MeasureIce software [626 multi-frame micrographs composed of 8 frames each in TIFF format] | Brown HG [Pubmed: 35965271] [DOI: 10.1038/s42003-022-03698-x] |
127.4 GB | 1.88 Å | |
2020-05-27 | 2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations [202 multi-frame micrographs composed of 200 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.0 TB | 2.7 Å | |
2020-05-27 | 2.6 Angstrom cryo-EM reconstructions of HemQ from Geobacillus in the presence of substantial aberrations [257 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.3 TB | 2.6 Å | |
2020-05-26 | 2.3 Angstrom cryo-EM reconstructions of HemQ from Geobacillus [258 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.4 TB | 2.32 Å | |
2023-02-28 | Single particle cryo-EM dataset of mitochondrial respiratory complex I from Bos taurus in DDM [2370 multi-frame micrographs composed of 24 frames each in MRC format] | Bridges HR, Blaza JN, Yin Z, Chung I, Pollak MN, Hirst J [Pubmed: 36701435] [DOI: 10.1126/science.ade3332] |
352.7 GB | 2.8 - 3.5 Å | |
2023-02-28 | Single particle cryo-EM dataset of mitochondrial respiratory complex I from Bos taurus in DDM in the presence of IM1761092 [17203 multi-frame micrographs composed of 40 frames each in TIFF format] | Bridges HR, Blaza JN, Yin Z, Chung I, Pollak MN, Hirst J [Pubmed: 36701435] [DOI: 10.1126/science.ade3332] EMD-14251 EMD-14252 EMD-14253 EMD-14254 EMD-14255 EMD-14256 EMD-14257 EMD-14258 EMD-14259 EMD-14260 EMD-14261 EMD-14262 EMD-14263 EMD-14264 EMD-14265 EMD-14266 EMD-14267 EMD-14268 EMD-14269 EMD-14270 EMD-14272 EMD-14273 EMD-14274 EMD-14275 EMD-14276 EMD-14277 EMD-14278 EMD-14279 EMD-14280 EMD-14281 EMD-14282 EMD-14283 EMD-14284 EMD-14285 EMD-14286 EMD-14287 EMD-14288 EMD-14289 EMD-14290 EMD-14291 EMD-14292 EMD-14293 EMD-14294 EMD-14295 EMD-14296 EMD-14297 EMD-14298 EMD-14299 EMD-14300 EMD-14301 EMD-14302 EMD-14303 EMD-14304 EMD-14305 EMD-14306 EMD-14307 EMD-14308 EMD-14309 EMD-14310 EMD-14311 |
6.5 TB | 2.17 - 2.68 Å |