Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-10-07 |  |
Tilt series of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein [6 tilt series in MRC format] | Marcink TC, Porotto M, des Georges A, Moscona A [Pubmed: 35984891] [DOI: 10.1126/sciadv.abo3153] |
9.6 GB | — |
| 2021-06-18 |  |
cryo-FIB and cryo-ET study of ribosome and polysome structures in E. coli [3 tilt series in MRC format] | Xiang YJ, Chang YJ, Liu J, Jacobs-Wagner C [Pubmed: 34186018] [DOI: 10.1016/j.cell.2021.05.037] |
9.7 GB | 20.0 - 27.0 Å |
| 2024-06-05 |  |
Native structure of a human GBP defense complex for cell-autonomous immunity to infection [280 tilt series in TIFF format] | MacMicking JDM, Zhu SZ [Pubmed: 38422126] [DOI: 10.1126/science.abm9903] |
9.7 GB | 17.0 Å |
| 2022-03-28 |  |
Representative data from Near-native state imaging by cryo-soft-X-ray tomography reveals remodelling of cytoplasmic vesicles and mitochondria during HSV-1 infection [14 reconstructed volumes in MRC format] | Nahas KLN, Connor VC, Scherer KM, Kaminski CF, Harkiolaki M, Crump CM, Graham SC [DOI: 10.1101/2021.10.11.463900] |
9.9 GB | — |
| 2021-11-26 |  |
Reconstructed cryo soft X-ray tomography dataset of a treated NIH-3T3 cell with corresponding correlated cryo-3D-SIM channels [300 reconstructed volumes in TIFF format] | Groen J, Pereiro E [Pubmed: 34909150] [DOI: 10.1039/d1sc04183e] |
10.1 GB | — |
| 2018-07-27 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 53841 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
10.1 GB | 3.73 - 4.27 Å |
| 2021-11-16 |  |
Subcellular architecture collodaria photosymbiosis [7 multi-frame micrographs composed of 1000 frames each in TIFF format] | Decelle JD [Pubmed: 34499794] [DOI: 10.1111/1462-2920.15766] |
10.3 GB | — |
| 2025-06-15 |  |
Scan 5 part 1 according to material & methods [1229 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
10.3 GB | — |
| 2022-05-03 |  |
In situ single particle classification reveals distinct 60S maturation intermediates in cells [multiple data sets in MRC format] | Lucas BA, Zhang K, Loerch S, Grigorieff N [DOI: 10.1101/2022.04.10.487797] |
10.5 GB | — |
| 2014-06-19 |  |
Cryo-electron tomography average of an C1-IgG complex [27 class averages in MRC format] | Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI [Pubmed: 24626930] [DOI: 10.1126/science.1248943] |
10.8 GB | 66.0 Å |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad-like cell attached to plastic [718 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
10.8 GB | — |
| 2025-06-30 |  |
FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T, Sviben S | 10.8 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 11.2 min after anaphase onset [777 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Heriche JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [DOI: 10.1038/s41594-017-0001-9] |
11.0 GB | — |
| 2021-07-07 |  |
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [multiple data sets in MRC format] | Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N [Pubmed: 34114559] [DOI: 10.7554/eLife.68946] |
11.0 GB | 20.0 Å |
| 2024-11-06 |  |
Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format] | Castranova D, Dell CW, Narayan K, Weinstein BM [DOI: 10.1101/2024.07.25.605139] |
11.4 GB | — |
| 2025-06-09 |  |
Scan 4b according to material & methods [319 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
11.4 GB | — |
| 2024-09-26 |  |
SBF SEM images of a notoroid in transverse orientation (Fig S24) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC [DOI: 10.1038/s41586-024-08332-w] |
11.5 GB | — |
| 2016-01-27 |  |
Cryo-electron tomogram of host-free Chlamydia trachomatis with type III secretion system [1 class averages in MRC format] | Nans A, Kudryashev M, Saibil HR, Hayward RD [Pubmed: 26656452] [DOI: 10.1038/ncomms10114] |
11.6 GB | 33.0 Å |
| 2020-09-11 |  |
Human Parainfluenza Virus Fusion Complex Glycoproteins Imaged In Action On Authentic Viral Surfaces [2 tilt series in MRC format] | Marcink TC, Wang T, des Georges A, Porotto M, Moscona A [Pubmed: 32956394] [DOI: 10.1371/journal.ppat.1008883] |
11.6 GB | 17.18 Å |
| 2023-01-03 |  |
Cryo electron tomography of Ca. L. ossiferum [multiple data sets in MRC format] | Wollweber F, Xu J [Pubmed: 36544020] [DOI: 10.1038/s41586-022-05550-y] |
11.6 GB | 11.7 - 24.5 Å |
| 2014-01-03 |  |
2D crystal images of the potassium channel MloK1 with and without cAMP ligand [multiple data sets in TIFF format] | Kowal J, Chami M, Baumgartner P, Arheit M, Chiu P-L, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H [Pubmed: 24469021] [DOI: 10.1038/ncomms4106] |
11.6 GB | 7.0 Å |
| 2019-05-08 |  |
Integrative structure and functional anatomy of a nuclear pore complex [multiple data sets in TIFF format] | Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP [Pubmed: 29539637] [DOI: 10.1038/nature26003] |
11.8 GB | 28.0 Å |
| 2019-10-04 |  |
Single particle cryo-EM dataset of clathrin cages with phase flipping suitable for refinement [stack of 12785 particles in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
11.9 GB | 9.07 - 23.68 Å |
| 2022-11-11 |  |
Cryo-electron tomography of microtubules assembled in Xenopus egg cytoplasmic extracts [6 tilt series in MRC format] | Guyomar C, Bousquet C, Ku S, Heumann J, Guilloux G, Gaillard N, Heichette C, Duchesne L, Steinmetz MO, Gibeaux R, Chrétien D [Pubmed: 36503602] [DOI: 10.7554/eLife.83021] |
12.1 GB | 43.3 Å |
| 2017-12-18 |  |
CryoET of T20S proteasome single particle [multiple data sets in MRC format] | Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
12.4 GB | — |
