Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2015-01-16 |  |
Tobacco Mosaic Virus K2 Summit dataset including manually boxed helix coordinates [14 multi-frame micrographs composed of 22 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
15.7 GB | 4.0 Å |
| 2018-04-27 |  |
Cryo electron tomography of sea urchin sperm flagella [31 tilt series in MRC format] | Lin J, Nicastro D [Pubmed: 29700238] [DOI: 10.1126/science.aar1968] |
15.8 GB | 30.0 - 31.0 Å |
| 2022-01-12 |  |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction [696 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
15.9 GB | — |
| 2020-02-18 |  |
Structure of an undocked hemichannel of the N-terminal-deleted INX-6 in a nanodisc [300 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
15.9 GB | 3.6 Å |
| 2023-06-02 |  |
Cryo-ET tilt series from mouse islets lift-out sample [multiple data sets in TIFF format] | Wu Y, Qin C, Du W, Guo Z, Chen L, Guo Q [Pubmed: 37201639] [DOI: 10.1016/j.jsb.2023.107971] |
16.0 GB | — |
| 2021-01-22 |  |
SBF SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
16.5 GB | — |
| 2020-12-21 |  |
CEM500K - A large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning. [496544 micrographs in TIFF format] | Conrad RW, Narayan K [DOI: 10.1101/2020.12.11.421792] |
16.6 GB | — |
| 2021-09-10 |  |
cryo electron tomography of Apoferritin [6 tilt series in TIFF format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
17.3 GB | 2.86 Å |
| 2020-11-06 |  |
Serial cryoFIB/SEM reveals cytoarchitectural disruptions in Leigh syndrome patient cells [multiple data sets in TIFF format] | Zhu Y, Sun D, Schertel A, Fu X, Gwo P, Watson A, Zanetti-Domingues LC, Marisa L. Martin-Fernandez ML, Freyberg Z, Zhang P [Pubmed: 33096015] [DOI: 10.1016/j.str.2020.10.003] |
17.3 GB | — |
| 2021-08-13 |  |
Serial electron diffraction from hen egg-white lysozyme [34 diffraction images in BIG DATA VIEWER HDF5 format] | Bücker R, Hogan-Lamarre P, Mehrabi P, Schulz EC [Pubmed: 32081905] [DOI: 10.1038/s41467-020-14793-0] |
17.7 GB | 1.8 Å |
| 2022-12-13 |  |
Focused ion beam-scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag [1151 micrographs in TIFF format] | Steyer AM, Möbius W [Pubmed: 36354016] [DOI: 10.1002/glia.24290] |
17.8 GB | — |
| 2023-02-28 |  |
Cryo serial FIB/SEM of mouse heart tissue [136 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
18.0 GB | — |
| 2024-06-04 |  |
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion [278 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
18.5 GB | — |
| 2022-01-12 |  |
FIB-SEM of an Mbp-deficient shiverer mouse optic nerve [857 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
18.8 GB | — |
| 2023-02-28 |  |
Cryo-ET tilt series of HPIV3 clinical isolates in the presence of an F neutralizing Fab [6 tilt series in MRC format] | Marcink T, Cheng W, Porotto M, des Georges A, Moscona A [Pubmed: 36763666] [DOI: 10.1126/sciadv.ade2727] |
19.1 GB | 16.5 Å |
| 2018-10-23 |  |
Cryo-electron microscopy data of thermostabilized avian CFTR [stack of 2 particles in MRCS format] | Fay JF [Pubmed: 30281975] [DOI: 10.1021/acs.biochem.8b00763] |
19.3 GB | 4.3 - 6.6 Å |
| 2022-12-19 |  |
CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM. [multiple data sets in TIFF format] | Lleti JMSL, Steyer AMS, Schwab YS | 19.7 GB | — |
| 2019-10-04 |  |
Single particle cryo-EM dataset of clathrin cages suitable for subparticle extraction [multiple data sets in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
19.9 GB | 9.07 - 23.68 Å |
| 2024-06-05 |  |
Cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts [245 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
20.2 GB | — |
| 2024-02-19 |  |
Graphene-sandwiched apoferritin [55 multi-frame micrographs composed of 32 frames each in TIFF format] | Liu N, Xu J, Wang HW [Pubmed: 38252835] [DOI: 10.1073/pnas.2309384121] |
20.2 GB | 3.1 Å |
| 2021-02-12 |  |
Negative-stained transmission electron microscopy of the MTA-HDAC-MBD core complex purified from EXPI cells [325 micrographs in MRC format] | Mackay JP, Landsberg MJ, Jackman MJ [Pubmed: 33264611] [DOI: 10.1016/j.celrep.2020.108450] |
20.3 GB | 29.0 Å |
| 2021-10-01 |  |
Training data set for automated 2D class selection [18051 class averages in MRCS format] | Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW [Pubmed: 34783343] [DOI: 10.1042/bcj20210708] |
20.7 GB | — |
| 2020-11-18 |  |
SARS-CoV-2 infection in human adult lung alveolar stem cells [multiple data sets in TIFF format] | Youk J, Kim T, Evans KV, Jeong YI, Hur Y, Hong SP, Kim JH, Yi K, Kim SY, Na KJ, Bleazard T, Kim HM, Fellows M, Mahbubani KT, Saeb-Parsy K, Kim SY, Kim YT, Koh GY, Choi BS, Ju YS, Lee JH [Pubmed: 33142113] [DOI: 10.1016/j.stem.2020.10.004] |
20.8 GB | — |
| 2024-06-04 |  |
Cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts [284 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
21.4 GB | — |
| 2022-01-12 |  |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction [747 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [DOI: 10.1101/2020.09.02.279612] |
21.5 GB | — |
