Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-08-11 |  |
Human CALHM2 in nanodisc, 1 mM EDTA [2328 multi-frame micrographs composed of 50 frames each in TIFF format] | Syrjanen JL, Michalski K, Chou TH, Grant T, Rao S, Simorowski N, Tucker SJ, Grigorieff N, Furukawa H [Pubmed: 31988524] [DOI: 10.1038/s41594-019-0369-9] |
604.3 GB | 3.68 Å |
| 2020-08-06 |  |
Cryo-EM Structure of GluD1-Orphan Delta Receptor Reveals a Novel Architecture in the Ionotropic Glutamate Receptor Family [3938 multi-frame micrographs composed of 40 frames each in MRC format] | Burada AP, Vinnakota R, Kumar J [Pubmed: 31925409] [DOI: 10.1038/s41594-019-0359-y] |
6.5 TB | 8.1 Å |
| 2020-08-06 |  |
Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [18 multi-frame micrographs composed of 300 frames each in TIFF format] | Peddie CP, Jones ML, Collinson LM | 15.6 GB | — |
| 2020-08-06 |  |
FIB/SEM sample dataset MCB-CLEM IV Weiner [1 multi-frame micrographs composed of 844 frames each in TIFF format] | Weiner A | 2.8 GB | — |
| 2020-07-30 |  |
Cryo electron microscopy of RyR1 in the presence and abscence of Ca, Caffeine and ATP ligands [stack of 791956 particles in SPIDER format] | Dashti A [Pubmed: 32948759] [DOI: 10.1038/s41467-020-18403-x] |
334.2 GB | 4.5 Å |
| 2020-07-30 |  |
Single-Particle Cryo-EM of Arabinosyltransferase EmbB from Mycobacterium smegmatis, Collected using both Falcon III and K2 Detectors [multiple data sets in MRCS, TIFF and MRC formats] | Tan YZ, Rodrigues J, Keener JE, Zheng RB, Brunton R, Kloss B, Giacometti SI, Rosário AL, Zhang L, Niederweis M, Clarke OB, Lowary TL, Marty MT, Archer M, Potter CS, Carragher B, Mancia F [Pubmed: 32636380] [DOI: 10.1038/s41467-020-17202-8] |
4.5 TB | 3.3 Å |
| 2020-07-30 |  |
Cryo-EM structures of calcium homeostasis modulator (CALHM) channels [multiple data sets in TIFF format] | Demura K, Kusakizako T, Shihoya W, Hiraizumi M, Shimada H, Yamashita K, Nishizawa T, Nureki O [Pubmed: 32832629] [DOI: 10.1126/sciadv.aba8105] |
6.8 TB | 2.66 - 3.6 Å |
| 2020-07-28 |  |
Cryo-EM structure of the formoterol-bound turkey beta1 adrenoceptor coupled to beta-arrestin-1 with bound Fab30 in lipid nanodisc [multiple data sets in TIFF and MRCS formats] | Lee Y, Tate CG [Pubmed: 32555462] [DOI: 10.1038/s41586-020-2419-1] |
4.0 TB | 3.3 Å |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 1 [multiple data sets in TIFF and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
599.5 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — |
| 2020-07-27 |  |
Saccharomyces cerevisiae fatty acid synthase complex with bound gamma subunit [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
329.3 GB | 2.8 Å |
| 2020-07-27 |  |
Saccharomyces cerevisiae fatty acid synthase complex [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
391.7 GB | 2.9 Å |
| 2020-07-24 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 1 [multiple data sets in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
247.7 GB | — |
| 2020-07-24 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — |
| 2020-07-21 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 3 [multiple data sets in MRC and TIFF formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
106.5 GB | — |
| 2020-07-21 |  |
TASK2 in MSP1D1 lipid nanodisc at pH8.5 [3470 multi-frame micrographs composed of 50 frames each in TIFF format] | Li B, Brohawn SG [Pubmed: 32999458] [DOI: 10.1038/s41586-020-2770-2] |
2.3 TB | 3.52 Å |
| 2020-07-21 |  |
TASK2 in MSP1D1 lipid nanodisc at pH6.5 [3024 multi-frame micrographs composed of 50 frames each in TIFF format] | Li B, Brohawn SG [Pubmed: 32999458] [DOI: 10.1038/s41586-020-2770-2] |
2.0 TB | 3.45 Å |
| 2020-07-21 |  |
Single particle cryo EM dataset of SARS-CoV-2 Spike protein in uncleavable form, which generated a 2.6Å reconstruction of the closed trimer. [9210 multi-frame micrographs composed of 30 frames each in MRC format] | Wrobel AG, Benton DJ, Nans A, Rosenthal PB, Gamblin SJ [Pubmed: 32647346] [DOI: 10.1038/s41594-020-0468-7] |
8.4 TB | 2.6 Å |
| 2020-07-15 |  |
CryoEM reconstruction of human ABCG2 transporter with inhibitor MZ29 and 5D3-Fab [multiple data sets in MRC and MRCS formats] | Jackson SM, Manolaridis I, Kowal J, Zechner M, Taylor NMI, Bause M, Bauer S, Bartholomaeus R, Bernhardt G, Koenig B, Buschauer A, Stahlberg H, Altmann KH, Locher KP [Pubmed: 29610494] [DOI: 10.1038/s41594-018-0049-1] |
1.9 TB | 3.1 Å |
| 2020-07-14 |  |
Separating distinct macromolecular assemblies from cryo-EM images [2423 micrographs in MRC format] | Verbeke EJ, Zhou Y, Horton AP, Mallam AL, Taylor DW, Marcotte EM [Pubmed: 31726096] [DOI: 10.1016/j.jsb.2019.107416] |
128.5 GB | 4.0 - 19.0 Å |
| 2020-07-14 |  |
3 Å resolution single particle reconstruction of glucosyltransferase ALG6 in nanodisc [multiple data sets in MRC and TIFF formats] | Bloch JS, Pesciullesi G, Boilevin J, Nosol K, Irobalieva RN, Darbre T, Aebi M, Kossiakoff AA, Reymond JL, Locher KP [Pubmed: 32103179] [DOI: 10.1038/s41586-020-2044-z] |
2.8 TB | 3.0 Å |
| 2020-07-10 |  |
Cryo electron tomography - tilt-series of Sars-Cov-2 [266 tilt series in MRC format] | Turoňová B, Sikora M, Schürmann C, Hagen WJH, Welsch S, Blanc FEC, von Bülow S, Gecht M, Bagola K, Hörner C, van Zandbergen G, Landry J, de Azevedo NTD, Mosalaganti S, Schwarz A, Covino R, Mühlebach MD, Hummer G, Krijnse Locker J, Beck M [Pubmed: 32817270] [DOI: 10.1126/science.abd5223] |
469.8 GB | 4.9 - 7.9 Å |
| 2020-07-06 |  |
Subnanometer-resolution structure determination in situ by a hybrid subtomogram averaging - single particle cryoEM - workflow - on TMV [4 tilt series in MRC format] | Sanchez RM, Zhang Y, Chen W, Dietrich L, Kudryashev M [Pubmed: 32709843] [DOI: 10.1038/s41467-020-17466-0] |
37.5 GB | 5.24 Å |
| 2020-07-06 |  |
Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format] | Greber BJ, Toso DB, Fang J, Nogales E [Pubmed: 30860024] [DOI: 10.7554/eLife.44771] |
9.2 TB | 3.7 Å |
| 2020-07-06 |  |
Single particle cryo-EM dataset of human adenovirus HAdV-D26 [stack of 8684 particles in MRCS format] | Abrishami V, Reddy VS, Huiskonen JT [Pubmed: 32470354] [DOI: 10.1016/j.pbiomolbio.2020.05.004] |
46.5 GB | 3.1 - 7.34 Å |
