Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-08-27 |  |
AL amyloid fibril from a lambda 3 light chain [1964 multi-frame micrographs composed of 40 frames each in TIFF format] | Radamaker L, Schmidt M, Fändrich M [Pubmed: 33558536] [DOI: 10.1038/s41467-021-21126-2] |
297.8 GB | 3.2 - 3.4 Å |
| 2019-06-07 |  |
AL amyloid fibril from a lambda 1 light chain [843 micrographs in MRC format] | Radamaker L, Schmidt M, Fändrich M, Fritz G [Pubmed: 30894526] [DOI: 10.1038/s41467-019-09032-0] |
44.7 GB | 3.3 Å |
| 2021-11-09 |  |
AL amyloid fibril from a glycosylated lambda 1 light chain [3032 multi-frame micrographs composed of 40 frames each in TIFF format] | Radamaker L, Schmidt M, Fändrich M, Karimi-Farsijani S [Pubmed: 34741031] [DOI: 10.1038/s41467-021-26553-9] |
495.9 GB | 3.1 Å |
| 2021-09-28 |  |
A. baumannii MsbA in complex with TBT1 [6083 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
267.1 GB | 3.97 Å |
| 2023-02-10 |  |
A surface morphometrics toolkit to quantify organellar membrane ultrastructure using cryo-electron tomography [multiple data sets in MRC format] | Barad BA, Medina M, Fuentes D, Wiseman RL, Grotjahn DA [DOI: 10.1101/2022.01.23.477440] |
126.9 GB | — |
| 2015-06-18 |  |
A simulated cryoEM data set of GroEL particles [stack of 10000 particles in MRC format] | Deng Y, Sun F | 1.5 GB | — |
| 2018-10-22 |  |
A multi-scale model of the yeast chromosome-segregation system [40 tilt series in MRC format] | Ng C, Deng L, Chen C, Lim H, Shi J, Surana U [Pubmed: 30504246] [DOI: 10.1083/jcb.201809088] |
95.4 GB | 32.0 Å |
| 2023-11-07 |  |
A molecular network of conserved factors keeps ribosomes dormant in the egg [multiple data sets in MRC, MRCS and TIFF formats] | Leesch F, Lorenzo-Orts L, Grishkovskaya I, Kandolf S, Belacic K, Meinhart A, Haselbach D, Pauli A [Pubmed: 36653451] [DOI: 10.1038/s41586-022-05623-y] |
32.5 TB | 2.3 - 3.2 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [multiple data sets in TIFF format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
256.7 GB | 4.2 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [1128 multi-frame micrographs composed of 64 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31748546] [DOI: 10.1038/s41467-019-13247-6] |
1.6 TB | 3.7 Å |
| 2021-01-08 |  |
A lamin A/C variant causing striated muscle disease provides insights into filament organization [2 tilt series in MRC format] | Tatli M [Pubmed: 33536248] [DOI: 10.1242/jcs.256156] |
2.7 GB | — |
| 2022-11-18 |  |
A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G [Pubmed: 36452870] [DOI: 10.1016/j.crmeth.2022.100322] |
2.0 TB | — |
| 2022-05-25 |  |
A drug and ATP binding site in type 1 ryanodine receptor [6890 multi-frame micrographs composed of 50 frames each in TIFF format] | Melville Z, Dridi H, Yuan Q, Reiken S, Wronska A, Liu Y, Clarke OB, Marks AR [Pubmed: 35580609] [DOI: 10.1016/j.str.2022.04.010] |
1.5 TB | 2.45 Å |
| 2019-05-07 |  |
A collection of yeast cell cryo-ET data [1488 tilt series in MRC format] | Gan L, Ng CT, Chen C, Cai S [Pubmed: 27605704] [DOI: 10.1091/mbc.E16-07-0506] |
2.5 TB | — |
| 2022-03-07 |  |
A biological nano-foam: the wall of coniferous bisaccate pollen (data sets) [multiple data sets in TIFF and JPEG formats] | Cojocaru R, Mannix O, Capron M, Miller CG, Jouneau PH, Gallet B, Falconet D, Pacureanu A, Stukins S [Pubmed: 35138906] [DOI: 10.1126/sciadv.abd0892] |
25.2 GB | — |
| 2020-09-25 |  |
A "drug sweeping" state of the TriABC triclosan efflux pump from Pseudomonas aeruginosa [multiple data sets in MRCS format] | Fabre L, Abigail LT, Ntreh AT, Amira A, Yazidi A, Inga IV, Weeks JW, Leus IV, Jon JW, Sudipta S, Ruickoldt J, Jakob J, Rouiller I, Zgurskaya HI, Isabelle I, Sygusch J, Helen HI, Jurgen J [Pubmed: 32966762] [DOI: 10.1016/j.str.2020.09.001] |
238.7 GB | 4.3 - 20.0 Å |
| 2024-02-09 |  |
5-HT2B receptor bound to LSD obtained by cryo-electron microscopy (cryoEM) [12751 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X, Cao C, Panova O, Roth BL, Skiniotis G [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
6.3 TB | 2.7 Å |
| 2024-02-09 |  |
5-HT2B receptor bound to LSD in complex with heterotrimeric mini-Gq protein obtained by cryo-electron microscopy (cryoEM) [3916 multi-frame micrographs composed of 57 frames each in TIFF format] | Barros-Alvarez X [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
2.0 TB | 2.9 Å |
| 2024-02-09 |  |
5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM) [9617 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
5.0 TB | 3.3 Å |
| 2024-02-13 |  |
5-HT2AR bound to a novel agonist in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM) [7573 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G [Pubmed: 36171289] [DOI: 10.1038/s41586-022-05258-z] |
3.4 TB | 3.45 Å |
| 2017-08-16 |  |
40 Degree Tilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.8 TB | 4.2 Å |
| 2023-01-30 |  |
3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format] | Dyhr MCA, Sadeghi M, Moynova R, Knappe C, Kepsutlu Çakmak B, Werner S, Schneider G, McNally J, Noe F, Ewers H [DOI: 10.1101/2022.05.16.492055] |
23.5 GB | — |
| 2023-10-17 |  |
3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen E. intestinalis [multiple data sets in DM4 format] | Antao NVA, Lam CKL, Davydov AD, Riggi MR, Sall JS, Petzold CP, Liang FL, Iwasa JI, Ekiert DCE, Bhabha GB [Pubmed: 37425741] [DOI: 10.1101/2023.07.02.547383] |
537.9 GB | — |
| 2018-01-03 |  |
3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles [318 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 2.9 GB | — |
| 2018-01-03 |  |
3D reconstruction of the cardiac mitochondria in Neaonate and Adult GP cardiomyocyte [262 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.2 GB | — |
