Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-09-25 |  |
The potassium-selective channelrhodopsin HcKCR1 and HcKCR2 in lipid nanodisc [multiple data sets in TIFF format] | Tajima S, Kim YS, Fukuda M, Nakamura S, Yamashita K, Deisseroth K [Pubmed: 37652010] [DOI: 10.1016/j.cell.2023.08.009] |
4.1 TB | 2.53 - 2.66 Å |
| 2021-01-27 |  |
Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex [2848 multi-frame micrographs composed of 48 frames each in TIFF format] | Takeda NS, Nakagawa R, Okazaki S, Hirano H, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O [Pubmed: 33333018] [DOI: 10.1016/j.molcel.2020.11.035] |
649.5 GB | 3.3 Å |
| 2022-09-05 |  |
Single-Particle CryoEM of mammalian V-ATPase with the TLDc domain protein mEAK7 bound (Various Datasets) [multiple data sets in MRCS, MRC and EER formats] | Tan YZ, Abbas YM, Wu JZ, Wu D, Keon KA, Hesketh GG, Bueler SA, Gingras AC, Robinson CV, Grinstein S, Rubinstein JL [Pubmed: 35794005] [DOI: 10.26508/lsa.202201527] |
12.7 TB | 3.5 - 4.1 Å |
| 2018-08-08 |  |
Sub-2 Å Single-Particle Cryo-EM Reconstruction of AAV2-L336C [multiple data sets in MRC and MRCS formats] | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D [Pubmed: 30194371] [DOI: 10.1038/s41467-018-06076-6] |
5.7 TB | 1.86 Å |
| 2017-05-15 |  |
Untilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.2 TB | 4.2 Å |
| 2017-08-16 |  |
40 Degree Tilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.8 TB | 4.2 Å |
| 2020-07-30 |  |
Single-Particle Cryo-EM of Arabinosyltransferase EmbB from Mycobacterium smegmatis, Collected using both Falcon III and K2 Detectors [multiple data sets in MRCS, TIFF and MRC formats] | Tan YZ, Rodrigues J, Keener JE, Zheng RB, Brunton R, Kloss B, Giacometti SI, Rosário AL, Zhang L, Niederweis M, Clarke OB, Lowary TL, Marty MT, Archer M, Potter CS, Carragher B, Mancia F [Pubmed: 32636380] [DOI: 10.1038/s41467-020-17202-8] |
4.5 TB | 3.3 Å |
| 2020-11-11 |  |
Single-Particle CryoEM of Influenza Hemagglutinin (HA) Trimer Vitrified Using Back-it-up [multiple data sets in MRCS and MRC formats] | Tan YZ, Rubinstein JL [Pubmed: 33135680] [DOI: 10.1107/S2059798320012474] |
1.2 TB | 2.9 Å |
| 2021-05-17 |  |
Single-Particle CryoEM of Human Apoferritin Light Chain Vitrified Using Back-it-up [multiple data sets in MRCS and MRC formats] | Tan YZ, Rubinstein JL [Pubmed: 33135680] [DOI: 10.1107/S2059798320012474] |
2.1 TB | 2.0 Å |
| 2020-05-29 |  |
Single-Particle Cryo-EM of Arabinofuranosyltransferase AftD from Mycobacteria, Mutant R1389S [multiple data sets in TIFF, MRC and MRCS formats] | Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, Lowary TL, Archer M, Niederweis M, Potter CS, Carragher B, Mancia F [Pubmed: 32386575] [DOI: 10.1016/j.molcel.2020.04.014] |
2.3 TB | 3.4 - 3.5 Å |
| 2020-05-26 |  |
Single-Particle Cryo-EM of Arabinofuranosyltransferase AftD from Mycobacteria, Wild-type [multiple data sets in MRCS and MRC formats] | Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, Lowary TL, Archer M, Niederweis M, Potter CS, Carragher B, Mancia F [Pubmed: 32386575] [DOI: 10.1016/j.molcel.2020.04.014] |
2.7 TB | 2.9 Å |
| 2023-06-23 |  |
Heterogeneous non-canonical nucleosomes predominate in yeast cells in situ [multiple data sets in TIFF and MRC formats] | Tan ZY, Cai S, Noble AJ, Chen JK, Shi J, Gan L [DOI: 10.7554/eLife.87672.1] |
711.4 GB | 24.0 Å |
| 2024-03-21 |  |
Cryo-EM of human cannabinoid receptor 1 bound to Fenofibrate with MiniGsq and Nb35 complex [multiple data sets in TIFF format] | Tang W, Wang T, Li F, Wang J [Pubmed: 38298116] [DOI: 10.1002/advs.202306311] |
1.1 TB | 2.88 - 3.05 Å |
| 2021-01-08 |  |
A lamin A/C variant causing striated muscle disease provides insights into filament organization [2 tilt series in MRC format] | Tatli M [Pubmed: 33536248] [DOI: 10.1242/jcs.256156] |
2.7 GB | — |
| 2021-01-08 |  |
Nanoscale view of the Clostridium thermocellum cellulosome during cellulose degradation reveals an ecological strategy leading to phenotypic heterogeneity [37 tilt series in MRC format] | Tatli M, Moraïs S, Tovar-Herrera OE, Bomble Y, Bayer EA, Medalia O, Mizrahi I | 1004.3 MB | — |
| 2020-12-04 |  |
Tilt series of native M. pneumoniae cells treated with chloramphenicol [2666 tilt series in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
83.8 GB | 3.4 - 3.7 Å |
| 2020-12-02 |  |
Apoferritin tilt series and frame series used to benchmark the resolution of both data types in M [multiple data sets in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
39.6 GB | 2.3 Å |
| 2022-07-08 |  |
Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis [2370 multi-frame micrographs composed of 48 frames each in TIFF format] | Teramoto T, Koyasu T, Adachi N, Kawasaki M, Moriya T, Numata T, Senda T, Kakuta Y [Pubmed: 34339732] [DOI: 10.1016/j.jbc.2021.101028] |
2.0 TB | 3.62 Å |
| 2024-02-28 |  |
Taf15 amyloid filaments - Individual 1, frontal cortex [1980 multi-frame micrographs composed of 1407 frames each in EER format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SYPC, Garringer HJ, Newell KL, Vidal R, Apostolova L, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
1.2 TB | 1.97 Å |
| 2024-03-21 |  |
Taf15 amyloid filaments - Individual 3 [15621 multi-frame micrographs composed of 40 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SYPC, Garringer HJ, Newell KL, Vidal R, Apostolova L, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
2.5 TB | 2.63 Å |
| 2023-08-18 |  |
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP (200 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
580.8 GB | 3.2 Å |
| 2023-08-18 |  |
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP (200 kV) [3527 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
664.6 GB | 3.6 Å |
| 2023-08-18 |  |
Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation (200 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
1.9 TB | 3.8 Å |
| 2023-08-18 |  |
Cryo-EM structure of the wild-type solitary ECF module in DDM micelles in the ATPase open and nucleotide-free conformation (200 kV) [1862 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
360.8 GB | 4.3 Å |
| 2023-09-06 |  |
Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation (300 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
4.4 TB | 2.6 Å |
