Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-05-22 |  |
Venous puncture wound thrombi, 1, 5, 20 min post-puncture, 100 nm XY raw images, 20 nm XY pixels every 20 micons, 3 nm wide area TEM montages at selected depth [15 multi-frame micrographs composed of 1 frames each in DM4 format] | Storrie B, Leapman RD [Pubmed: 34531522] [DOI: 10.1038/s42003-021-02615-y] |
381.2 GB | — |
| 2023-05-23 |  |
Archaeal DNA ligase and heterotrimeric PCNA with non-ligatable nicked DNA [3014 multi-frame micrographs composed of 37 frames each in TIFF format] | Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] |
2.1 TB | 4.16 Å |
| 2023-05-23 |  |
PIC-Mediator in complex with +1 nucleosome (T40N) [20082 micrographs in MRC format] | Chen X, Wang X, Liu W, Ren Y, Qu X, Li J, Yin X, Xu Y [Pubmed: 36201575] [DOI: 10.1126/science.abn8131] |
1.7 TB | 5.04 Å |
| 2023-05-23 |  |
Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome [6339 multi-frame micrographs composed of 51 frames each in TIFF format] | Eek P, Tan S [Pubmed: 36996811] [DOI: 10.1016/j.molcel.2023.03.006] |
4.1 TB | 3.2 Å |
| 2023-05-26 |  |
Archaeal DNA ligase and heterotrimeric PCNA with ligatable nicked DNA [multiple data sets in TIFF format] | Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] |
5.4 TB | 4.2 - 4.38 Å |
| 2023-05-26 |  |
Cryo-EM SPA datasets for Antibody 4-33 in complex with prefusion SARS-CoV-2 Spike glycoprotein (K3 movies/.tif files) [6976 multi-frame micrographs composed of 60 frames each in TIFF format] | Casner RG, Reddem ER, Shapiro L [Pubmed: 37776849] [DOI: 10.1016/j.immuni.2023.09.003] |
1.8 TB | 3.53 Å |
| 2023-06-02 |  |
Cryo-ET tilt series from mouse islets lift-out sample [multiple data sets in TIFF format] | Wu Y, Qin C, Du W, Guo Z, Chen L, Guo Q [Pubmed: 37201639] [DOI: 10.1016/j.jsb.2023.107971] |
16.0 GB | — |
| 2023-06-02 |  |
f1-derived nanorods [25065 multi-frame micrographs composed of 40 frames each in TIFF format] | Conners R, McLaren MJ, Gold V [Pubmed: 37169795] [DOI: 10.1038/s41467-023-37915-w] |
9.9 TB | 2.58 - 2.97 Å |
| 2023-06-02 |  |
Mycobacterium phage Patience [8640 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM | 2.2 TB | 2.39 Å |
| 2023-06-05 |  |
Cryo electron microscopy of Mce1 transporter from Mycobacterium smegmatis [multiple data sets in TIFF format] | Chen J, Bhabha G, Ekiert D [Pubmed: 37495693] [DOI: 10.1038/s41586-023-06366-0] |
20.9 TB | 2.71 - 3.19 Å |
| 2023-06-07 |  |
Cryo-electron micrographs of Hantaan virus polymerase in its apo state [2865 multi-frame micrographs composed of 50 frames each in TIFF format] | Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] |
660.7 GB | 3.27 Å |
| 2023-06-07 |  |
Cryo-electron micrographs of Hantaan virus polymerase in pre-initiation state [3261 multi-frame micrographs composed of 50 frames each in TIFF format] | Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] |
776.9 GB | 3.36 Å |
| 2023-06-07 |  |
Cryo-electron micrographs of Hantaan virus polymerase bound to its 5' viral RNA [2547 multi-frame micrographs composed of 50 frames each in TIFF format] | Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] |
608.2 GB | 3.23 Å |
| 2023-06-07 |  |
Cryo-electron micrographs of Hantaan virus polymerase in elongation state [3785 multi-frame micrographs composed of 50 frames each in TIFF format] | Durieux Trouilleton Q, Arragain B, Malet H [Pubmed: 37221161] [DOI: 10.1038/s41467-023-38555-w] |
927.5 GB | 3.14 Å |
| 2023-06-09 |  |
Cryo-EM SPA dataset of 2-oxoglutarate dehydrogenase complex from a Chaetomium thermophilum native cell extract [25991 multi-frame micrographs composed of 13 frames each in MRC format] | Skalidis I, Kyrilis FL, Tüting C, Träger TK, Hamdi F, Kastritis PL [Pubmed: 37217784] [DOI: 10.1038/s42003-023-04885-0] |
6.8 TB | 3.35 Å |
| 2023-06-09 |  |
CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains [2138 multi-frame micrographs composed of 40 frames each in TIFF format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] |
356.5 GB | 3.0 Å |
| 2023-06-09 |  |
CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains labelled with methoxy-X04 [4165 multi-frame micrographs composed of 40 frames each in TIFF format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] |
648.2 GB | 3.2 Å |
| 2023-06-13 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-1 stabilised by ADPNP [8136 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] |
2.9 TB | 3.25 - 3.3 Å |
| 2023-06-13 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-2 stabilised by ADPNP [11579 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] |
4.0 TB | 3.25 Å |
| 2023-06-13 |  |
Cryo-EM SPA dataset of a native lysate fraction from human liver microsomes (fraction #1) [2406 multi-frame micrographs composed of 45 frames each in TIFF format] | SU C.-C. | 1.1 TB | 2.83 - 3.47 Å |
| 2023-06-13 |  |
Cryo-EM SPA dataset of a native lysate fraction from human liver microsomes (fraction #2) [8425 multi-frame micrographs composed of 45 frames each in TIFF format] | SU C.-C. | 4.2 TB | 2.64 - 3.24 Å |
| 2023-06-16 |  |
HIV-1 capsid-like particles assembled from purified capsid protein and assembly cofactor IP6 [1487 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
818.8 GB | 3.6 Å |
| 2023-06-16 |  |
HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of assembly cofactor IP6 (pH 7.4) [696 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
1.1 TB | 3.1 Å |
| 2023-06-16 |  |
Defective HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the absence of assembly cofactor IP6 [696 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
456.4 GB | 7.1 Å |
| 2023-06-19 |  |
HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of dNTPs [696 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
1.5 TB | 3.5 Å |
