EMPIAR-11552 - Archaeal DNA ligase and heterotrimeric PCNA with ligatable nicked DNA [multiple data sets in TIFF format]

EMPIAR-11552

Archaeal DNA ligase and heterotrimeric PCNA with ligatable nicked DNA [multiple data sets in TIFF format]

Publication:

Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase

Sverzhinsky A, Tomkinson AE, Pascal JM

Structure (London, England : 1993) 30 (2021) 371-385.e5

PMID: 34838188

DOI: 10.1016/j.str.2021.11.002

Related EMDB entry:

EMD-24624 EMD-24625

Deposited:

2023-05-08

Released:

2023-05-26

Last modified:

2023-05-26

Imageset size:

5.39 TB

Imageset DOI:

10.6019/EMPIAR-11552

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of archaeal DNA ligase, PCNA, and ligatable DNA

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

4797

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.545, 0.545)

Details:

Gain references are provided.

Files:

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2. Unaligned multi-frame micrographs of archaeal DNA ligase, PCNA, and ligatable DNA

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3482

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.545, 0.545)

Details:

Gain references are provided.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)