Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-09-17 |  |
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0 [4080 micrographs in MRC format] | Godoy AS | 359.3 GB | 2.48 Å |
| 2021-09-17 |  |
human melatonin receptor MT1 - Gi1 complex [3487 multi-frame micrographs composed of 48 frames each in TIFF format] | Okamoto HH, Miyauchi H, Inoue A, Raimondi F, Tsujimoto H, Kusakizako T, Shihoya W, Yamashita K, Suno R, Nomura N, Kobayashi T, Iwata S, Nishizawa T, Nureki O [Pubmed: 34354246] [DOI: 10.1038/s41594-021-00634-1] |
878.0 GB | 3.3 Å |
| 2021-09-17 |  |
Single particle Data of diazaborine bound Drg1 [4963 multi-frame micrographs composed of 54 frames each in TIFF format] | Prattes M, Grishkovskaya I, Hodirnau VV, Haselbach D, Bergler H [Pubmed: 34108481] [DOI: 10.1038/s41467-021-23854-x] |
1.6 TB | 3.4 Å |
| 2021-09-10 |  |
cryo electron tomography of Apoferritin [6 tilt series in TIFF format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
17.3 GB | 2.86 Å |
| 2021-09-10 |  |
Structural analysis of receptors and actin polarity in platelet protrusions [3 reconstructed volumes in EM format] | Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O [Pubmed: 34504018] [DOI: 10.1073/pnas.2105004118] |
6.0 GB | 26.6 Å |
| 2021-09-01 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 4782 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
13.0 GB | 9.1 - 15.0 Å |
| 2021-09-01 |  |
CryoEM map of designed helical fusion protein C5_HFuse-3921 [6761 multi-frame micrographs composed of 50 frames each in TIFF format] | Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G [Pubmed: 33863889] [DOI: 10.1038/s41467-021-22276-z] |
2.0 TB | 8.06 Å |
| 2021-09-01 |  |
Lysosomes as Fiducials for SXT and SIM Correlation [166 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 162.4 MB | — |
| 2021-09-01 |  |
Cryo electron microscopy of ex-vivo human SAA amyloid fibrils [6465 multi-frame micrographs composed of 40 frames each in TIFF format] | Schmidt MS [Pubmed: 30846696] [DOI: 10.1038/s41467-019-09033-z] |
1.1 TB | 2.7 Å |
| 2021-08-27 |  |
CryoEM map of designed helical fusion protein C4_nat_HF-7900 [3607 multi-frame micrographs composed of 56 frames each in TIFF format] | Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G [Pubmed: 33863889] [DOI: 10.1038/s41467-021-22276-z] |
2.0 TB | 3.7 Å |
| 2021-08-27 |  |
Cryo-electron tomography of JCVI-Syn3A (large cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.5 GB | — |
| 2021-08-27 |  |
AL amyloid fibril from a lambda 3 light chain [1964 multi-frame micrographs composed of 40 frames each in TIFF format] | Radamaker L, Schmidt M, Fändrich M [Pubmed: 33558536] [DOI: 10.1038/s41467-021-21126-2] |
297.8 GB | 3.2 - 3.4 Å |
| 2021-08-25 |  |
Materials for step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo [5 reconstructed volumes in MRC format] | Scaramuzza S, Castaño-Díez D [Pubmed: 34437529] [DOI: 10.1371/journal.pbio.3001318] |
645.2 GB | — |
| 2021-08-20 |  |
Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.4 GB | — |
| 2021-08-13 |  |
Serial electron diffraction from hen egg-white lysozyme [34 diffraction images in BIG DATA VIEWER HDF5 format] | Bücker R, Hogan-Lamarre P, Mehrabi P, Schulz EC [Pubmed: 32081905] [DOI: 10.1038/s41467-020-14793-0] |
17.7 GB | 1.8 Å |
| 2021-08-13 |  |
Human apo ferritin frozen on TEM grid with Amorphous nickel titanium alloy supporting film [426 multi-frame micrographs composed of 32 frames each in TIFF format] | Huang X, Zhang L, Wen Z, Chen H, Li S, Ji G, Yin CC, Sun F [Pubmed: 32758492] [DOI: 10.1016/j.pbiomolbio.2020.07.009] |
134.5 GB | 2.4 Å |
| 2021-08-13 |  |
Human apo ferritin frozen on TEM grid with amorphous carbon supporting film [743 multi-frame micrographs composed of 32 frames each in TIFF format] | Huang X, Zhang L, Wen Z, Chen H, Li S, Ji G, Yin CC, Sun F [Pubmed: 32758492] [DOI: 10.1016/j.pbiomolbio.2020.07.009] |
226.5 GB | 2.6 Å |
| 2021-08-06 |  |
Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes [multiple data sets in MRCS, TIFF and MRC formats] | Steimle S, VanEeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F [Pubmed: 33568648] [DOI: 10.1038/s41467-021-21051-4] |
12.4 TB | 3.3 - 7.2 Å |
| 2021-07-30 |  |
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity [8120 multi-frame micrographs composed of 80 frames each in TIFF format] | Gupta TK, Klumpe S, Gries K, Strauss M, Rudack T, Schuller JM, Schroda M, Engel BD [Pubmed: 34166613] [DOI: 10.1016/j.cell.2021.05.011] |
2.0 TB | 3.8 Å |
| 2021-07-30 |  |
Structure of human telomerase holoenzyme with bound telomeric DNA [43639 multi-frame micrographs composed of 48 frames each in TIFF format] | Ghanim GE, Fountain AJ, van Roon AM, Rangan R, Das R, Collins K, Nguyen THD [Pubmed: 33883742] [DOI: 10.1038/s41586-021-03415-4] |
11.2 TB | 3.4 - 6.6 Å |
| 2021-07-29 |  |
The Myosin II Coiled Coil Domain Atomic Structure in its Native Environment [multiple data sets in MRC and MRCS formats] | Rahmani H, Hu Z, Daneshparvar N, Taylor DW, Taylor KT [Pubmed: 33782130] [DOI: 10.1073/pnas.2024151118] |
13.3 TB | 4.25 Å |
| 2021-07-23 |  |
Tilt-series taken from SARS-CoV-2 infected Vero cells. [multiple data sets in MRC format] | Mendonça L, Howe A, Gilchrist JB, Sheng Y, Sun D, Knight ML, Zanetti-Domingues LC, Bateman B, Krebs AS, Chen L, Radecke J, Li VD, Ni T, Kounatidis I, Koronfel MA, Szynkiewicz M, Harkiolaki M, Martin-Fernandez ML, James W, Zhang P [Pubmed: 34330917] [DOI: 10.1038/s41467-021-24887-y] |
52.7 GB | 10.6 - 16.0 Å |
| 2021-07-09 |  |
Cryo-electron tomography of the fungal membrane-assembled retromer:Grd19 coat containing Kex2 cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
347.7 GB | 9.2 - 9.5 Å |
| 2021-07-07 |  |
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [multiple data sets in MRC format] | Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N [Pubmed: 34114559] [DOI: 10.7554/eLife.68946] |
11.0 GB | 20.0 Å |
| 2021-07-02 |  |
Affinity-purified RqcH-DR-ribosome-associated quality control complexes from Bacillus subtilis [2510 multi-frame micrographs composed of 30 frames each in TIFF format] | Crowe-McAuliffe C, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 34255840] [DOI: 10.1093/nar/gkab589] |
213.5 GB | 3.2 Å |
