EMPIAR-10686 - Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats]

EMPIAR-10686

Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats]

Publication:

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps

Gilbert BR, Thornburg ZR, Lam V, Rashid FM, Glass JI, Villa E, Dame RT, Luthey-Schulten Z

Frontiers in molecular biosciences 8 (2021)

PMID: 34368224

DOI: 10.3389/fmolb.2021.644133

Related EMDB entry:

EMD-23661

Deposited:

2021-03-31

Released:

2021-08-20

Last modified:

2021-08-20

Imageset size:

6.40 GB

Imageset DOI:

10.6019/EMPIAR-10686

Experimental metadata:

Download xml json

Contains:

tilt series
micrographs - multiframe

Image Sets

1. Unaligned Tilt-series of JCVI-Syn3A (small cell)

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(4.265, 4.265)

Details:

Tilt-series is dose-weighted and motion-corrected using Warp. The last two frames of each tilt were removed due to excessive motion.

Files:

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2. Multi-frame micrographs of each tilt for tilt-series of JCVI-Syn3A (small cell)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(4.265, 4.265)

Details:

Dark-subtracted frames from serialEM. Last two frames should be excluded due to excessive motion. Counting mode gain-reference is included in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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