Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-01-15 |  |
Full-length ClpX AAA protein in a complex with ClpP peptidase [multiple data sets in TIFF and MRC formats] | Ghanbarpour A, Cohen SE, Fei X, Davis JH, Sauer RT [Pubmed: 37949857] [DOI: 10.1038/s41467-023-43145-x] |
1.9 TB | 3.12 Å |
| 2024-01-15 |  |
Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — |
| 2024-01-15 |  |
Structure of Bre1-nucleosome complex [4561 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhao F, Hicks CW, Wolberger C [Pubmed: 37872231] [DOI: 10.1038/s41594-023-01137-x] |
972.6 GB | 3.47 Å |
| 2024-01-15 |  |
CryoEM movies of nitrogenase (MoFeP + FeP) from Azotobacter vinelandii under catalytic turnover conditions with inhibitor BeFx [multiple data sets in MRC format] | Rutledge HL, Cook BD, Nguyen HPM, Tezcan FA, Herzik Jr MA [Pubmed: 35901182] [DOI: 10.1126/science.abq7641] |
1.7 TB | 2.4 Å |
| 2024-01-11 |  |
Cryo-ET detects bundled triple helices but not ladders in meiotic budding yeast [multiple data sets in MRC format] | Ma OX, Chong WG, Lee JKE, Cai S, Siebert CA, Howe A, Zhang P, Shi J, Surana U, Gan L [Pubmed: 35421110] [DOI: 10.1371/journal.pone.0266035] |
291.6 GB | 33.0 Å |
| 2024-01-11 |  |
In situ cryo-ET structure of phycobilisome–photosystem II supercomplex from red alga [60 reconstructed volumes in MRC format] | Meijing Li ML, Jianfei Ma JM [Pubmed: 34515634] [DOI: 10.7554/eLife.69635] |
113.9 GB | — |
| 2024-01-05 |  |
The Noc1-Noc2 RNP - a co-transcriptional large ribosomal assembly intermediate [multiple data sets in TIFF format] | Sanghai ZA, Piwowarczyk R, Vanden Broeck A, Klinge S [Pubmed: 37037974] [DOI: 10.1038/s41594-023-00947-3] |
5.7 TB | 4.0 Å |
| 2024-01-05 |  |
ATTRV20I amyloid fibrils from hereditary ATTR amloidosis [3954 multi-frame micrographs composed of 40 frames each in TIFF format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 37993462] [DOI: 10.1038/s41467-023-43301-3] |
1.2 TB | 3.39 Å |
| 2024-01-05 |  |
CryoEM micrographs of RAD51 filaments on ssDNA bound by the BRCA2 c-terminus [12005 multi-frame micrographs composed of 38 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.8 TB | 2.9 Å |
| 2023-12-18 |  |
cA3-bound TIR-SAVED [3907 multi-frame micrographs composed of 50 frames each in MRC format] | Hogrel G, Guild A, Graham S, Rickman H, Grüschow S, Bertrand Q, Spagnolo L [Pubmed: 35948638] [DOI: 10.1038/s41586-022-05070-9] |
47.7 TB | 3.8 Å |
| 2023-12-18 |  |
ATTRV122I amyloid fibrils from hereditary ATTR amloidosis [2068 multi-frame micrographs composed of 40 frames each in TIFF format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 37993462] [DOI: 10.1038/s41467-023-43301-3] |
644.5 GB | 2.99 Å |
| 2023-12-12 |  |
Optimizing Cryo-FIB Lamellas for sub-5Å in situ Structural Biology [multiple data sets in MRC format] | Khavnekar S, Vrbovská V, Zaoralová M, Kelley R, Beck F, Kotecha A, Plitzko JM, Erdmann PS [DOI: 10.1101/2022.06.16.496417] |
1.5 TB | 4.6 Å |
| 2023-12-12 |  |
CryoEM micrographs of RAD51 filaments on dsDNA bound by the BRCA2 c-terminus [10167 multi-frame micrographs composed of 93 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37919288] [DOI: 10.1038/s41467-023-42830-1] |
1.5 TB | 2.83 Å |
| 2023-12-11 |  |
Single particle movie data of NAIP5 [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Cao J, Paidmuddala B, Zhang L [Pubmed: 36604500] [DOI: 10.1038/s41594-022-00889-2] |
19.4 TB | 3.3 - 3.6 Å |
| 2023-12-11 |  |
SpCas9 bound to 12 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.1 TB | 3.64 Å |
| 2023-12-11 |  |
SpCas9 bound to 14 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
2.1 TB | 3.49 Å |
| 2023-12-11 |  |
SpCas9 bound to 16 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.3 TB | 3.12 Å |
| 2023-12-11 |  |
SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å |
| 2023-12-11 |  |
SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å |
| 2023-12-11 |  |
SpCas9 bound to 8 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.4 TB | 4.14 Å |
| 2023-12-04 |  |
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric and asymmetric conformations [multiple data sets in MRC format] | Xu X, Ben-Hail D, des Georges A, Pozharski E [Pubmed: 31896582] [DOI: 10.1073/pnas.1919490117] |
704.4 GB | 2.8 - 3.1 Å |
| 2023-12-04 |  |
Structural architecture of the acidic region of the B domain of coagulation factor V [8429 micrographs in MRC format] | Mohammed BM, Basore K, Summers B, Pelc LA, Di Cera E [Pubmed: 33684942] [DOI: 10.1182/blood.2021010684] |
447.1 GB | 3.05 - 3.3 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum [13348 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.7 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with coenzyme A bound to the E2o domain [12202 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.2 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å |
