오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2023-12-11 | SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å | |
2024-02-06 | SpCas9 bound to 18 nucleotide complementary DNA substrate in the checkpoint state [multiple data sets in EER format] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
7.7 TB | 2.54 Å | |
2023-12-11 | SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å | |
2023-12-11 | SpCas9 bound to 8 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.4 TB | 4.14 Å | |
2024-02-29 | Sulfolobus acidocaldarius s-layer SlaA [multiple data sets in TIFF format] | Gambelli L, McLaren MJ, Sanders K, Gaines M, Clark L, Gold VAM, Kattnig D, Sikora M, Hanus C, Isupov M, Daum B [Pubmed: 38251732] [DOI: 10.7554/eLife.84617] |
4.5 TB | 3.1 - 3.9 Å | |
2024-01-05 | CryoEM micrographs of RAD51 filaments on ssDNA bound by the BRCA2 c-terminus [12005 multi-frame micrographs composed of 38 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.8 TB | 2.9 Å | |
2024-02-13 | Single-Particle Cryo-EM of AAV2 at Various Tilts [multiple data sets in MRCS and MRC formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
730.4 GB | 2.1 - 2.2 Å | |
2023-12-12 | CryoEM micrographs of RAD51 filaments on dsDNA bound by the BRCA2 c-terminus [10167 multi-frame micrographs composed of 93 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37919288] [DOI: 10.1038/s41467-023-42830-1] |
1.5 TB | 2.83 Å | |
2024-01-15 | CryoEM movies of nitrogenase (MoFeP + FeP) from Azotobacter vinelandii under catalytic turnover conditions with inhibitor BeFx [multiple data sets in MRC format] | Rutledge HL, Cook BD, Nguyen HPM, Tezcan FA, Herzik Jr MA [Pubmed: 35901182] [DOI: 10.1126/science.abq7641] |
1.7 TB | 2.4 Å | |
2024-03-26 | Single-Particle Cryo-EM of RNA Polymerase at Various Tilts [multiple data sets in TIFF, MRC and MRCS formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
487.4 GB | 3.1 Å | |
2024-05-14 | Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS [5781 multi-frame micrographs composed of 981 frames each in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
2.3 TB | 1.9 Å | |
2024-04-02 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.8 TB | 7.8 Å | |
2024-05-13 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL5c extended [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
1.0 TB | 9.1 Å | |
2024-04-02 | Cryo-EM of SARS-CoV-1 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.2 TB | 7.1 Å | |
2024-02-06 | RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease [multiple data sets in TIFF format] | Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H [Pubmed: 36423304] [DOI: 10.1126/science.add7347] |
2.6 TB | 2.49 - 2.84 Å | |
2024-02-01 | Structure and engineering of the type III-E CRISPR-Cas7-11 effector complex [2781 multi-frame micrographs composed of 64 frames each in TIFF format] | Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H [Pubmed: 35643083] [DOI: 10.1016/j.cell.2022.05.003] |
853.6 GB | 2.45 Å | |
2024-02-09 | SBF-SEM imaging of Leishmania mexicana culture derived promastigotes [708 multi-frame micrographs composed of 1 frames each in MRC format] | Hair M [DOI: 10.1101/2023.11.28.568992] |
131.9 GB | — | |
2024-04-09 | In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [multiple data sets in EER and MRC formats] | Kelley R, Khavnekar S, Zhang X, Obr M, Chakraborty S, Koh AF, Heebner J, Righetto R, Waltz F, McCafferty C, Van den Hoek H, Wietrzynski W, Van Der Stappen P, Michael A, Van Dorst S, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
27.7 TB | — | |
2024-02-13 | Plant SBF-SEM - Tobacco Leaf Chloroplast [130 micrographs in TIFF format] | Wickramanayake JS, Czymmek KJ [Pubmed: 37451777] [DOI: 10.1016/bs.mcb.2023.04.008] |
544.4 MB | — | |
2024-04-17 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL5b extended [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
14.8 TB | 7.4 Å | |
2024-04-07 | Cryo-EM of BtCoV-HKU5 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
12.9 TB | 5.9 - 8.0 Å | |
2024-04-17 | Cryo-EM of MERS 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
16.7 TB | 6.4 - 6.9 Å | |
2024-04-07 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
10.8 TB | 7.8 Å | |
2024-02-01 | Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes [multiple data sets in EER and MRC formats] | Foglizzo M, Burdett H, Wilson MD, Zeqiraj E [Pubmed: 37823591] [DOI: 10.1093/nar/gkad793] |
10.4 TB | 3.4 - 3.75 Å | |
2024-04-17 | Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304 [16113 multi-frame micrographs composed of 50 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
6.5 TB | 2.04 Å |