Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-04-05 |  |
CryoET of apoferritin with 0.5 mM TCEP single particle with spot-to-plunge time of 170ms [multiple data sets in MRC and DYNAMO TBL AND OMD FILES formats] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
31.6 GB | — |
| 2018-04-05 |  |
CryoET of hemagglutinin single particle with spot-to-plunge time of 100ms [multiple data sets in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
21.9 GB | — |
| 2018-04-05 |  |
CryoET of insulin-bound insulin receptor single particle with spot-to-plunge time of 200ms [multiple data sets in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
40.4 GB | — |
| 2018-04-05 |  |
CryoET of insulin-bound insulin receptor single particle with spot-to-plunge time of 600ms [multiple data sets in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
79.4 GB | — |
| 2018-04-23 |  |
Single particle cryoEM of hemagglutinin with spot-to-plunge time of 100ms [1100 micrographs in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
288.3 GB | 3.77 Å |
| 2018-07-27 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 209816 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
115.4 GB | 3.73 - 4.27 Å |
| 2018-07-30 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 61929 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
34.0 GB | 3.73 - 4.27 Å |
| 2018-07-27 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 53841 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
10.1 GB | 3.73 - 4.27 Å |
| 2018-10-22 |  |
The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin [59 tilt series in MRC format] | Cai S, Böck D, Pilhofer M, Gan L [Pubmed: 30091658] [DOI: 10.1091/mbc.E18-05-0331] |
1.9 GB | 21.0 - 24.0 Å |
| 2018-05-30 |  |
Structure of a pre-catalytic spliceosome [stack of 327490 particles in MRCS format] | Plaschka C, Lin PC, Nagai K, Nakane T, Kimanius D, Lindahl E, Scheres SHW [Pubmed: 28530653] [DOI: 10.1038/nature22799] |
126.5 GB | 3.6 - 17.2 Å |
| 2018-05-11 |  |
Rabbit muscle aldolase movies obtained using Talos Arctica operating at 200 kV equipped with a K2 [663 multi-frame micrographs composed of 44 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 28991891] [DOI: 10.1038/nmeth.4461] |
244.7 GB | 2.6 Å |
| 2018-05-04 |  |
Benchmarking cryo-EM single particle analysis workflow [699 multi-frame micrographs composed of 33 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AR, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
37.3 GB | 2.5 - 2.8 Å |
| 2018-05-11 |  |
Benchmarking cryo-EM single particle analysis workflow [1626 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KJ, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
345.0 GB | 3.0 - 4.6 Å |
| 2018-06-13 |  |
Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å |
| 2018-05-11 |  |
T. acidophilum 20S proteasome core movies obtained using Talos Arctica operating at 200 kV equipped with a K2 – stage position used for exposure target navigation [317 multi-frame micrographs composed of 68 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 28991891] [DOI: 10.1038/nmeth.4461] |
140.9 GB | 3.1 Å |
| 2018-05-11 |  |
T. acidophilum 20S proteasome core movies obtained using Talos Arctica operating at 200 kV equipped with a K2 – image shift used for exposure target navigation [262 multi-frame micrographs composed of 68 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 28991891] [DOI: 10.1038/nmeth.4461] |
945.5 GB | 3.3 Å |
| 2018-05-14 |  |
Rabbit muscle aldolase single particle [441 micrographs in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
124.5 GB | — |
| 2018-05-14 |  |
T20S proteasome single particle [586 micrographs in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
116.1 GB | — |
| 2018-07-06 |  |
Structure of the herpes-simplex virus portal-vertex [3818 micrographs in MRC format] | McElwee M, Vijayakrishnan S, Rixon FJ, Bhella D [Pubmed: 29924793] [DOI: 10.1371/journal.pbio.2006191] |
238.6 GB | 7.7 Å |
| 2018-06-11 |  |
RNA Polymerase III initially transcribing complex [multiple data sets in TIFF and MRC formats] | Vorländer MK, Khatter H, Wetzel R, Hagen WJH, Müller CW [Pubmed: 29345638] [DOI: 10.1038/nature25440] |
1.6 TB | 4.3 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [5198 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
324.9 GB | 3.0 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [13872 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
867.0 GB | 3.75 Å |
| 2018-06-20 |  |
An atomic structure of human gamma-secretase [2925 multi-frame micrographs composed of 20 frames each in MRCS format] | Bai XC, Yan C, Yang G, Lu P, Ma D, Sun L, Zhou R, Scheres SHW, Shi Y [Pubmed: 26280335] [DOI: 10.1038/NATURE14892] |
11.7 TB | 3.4 Å |
| 2018-07-05 |  |
Cryo-EM structure of alpha-synuclein fibrils [118 multi-frame micrographs composed of 50 frames each in MRC format] | Guerrero-Ferreira R, Taylor NM, Mona D, Ringler P, Lauer ME, Riek R, Britschgi M, Stahlberg H [Pubmed: 29969391] [DOI: 10.7554/elife.36402] |
6.3 GB | — |
| 2018-08-23 |  |
CryoEM structure of human LRRC8A [5805 multi-frame micrographs composed of 40 frames each in TIFF format] | Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O [Pubmed: 30127360] [DOI: 10.1038/s41594-018-0109-6] |
2.9 TB | 4.25 Å |
