EMPIAR-10184 - Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format]

EMPIAR-10184

Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format]

Publication:

Benchmarking cryo-EM single particle analysis workflow

Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B

Frontiers (---)

Related EMDB entry:

EMD-7550 EMD-7541 EMD-7528

Deposited:

2018-05-03

Released:

2018-06-13

Last modified:

2018-06-13

Imageset size:

85.62 GB

Imageset DOI:

10.6019/EMPIAR-10184

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. aligned micrographs of rabbit muscle aldolase from 17dec27a

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

1614

Image size:

(3838, 3710)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.85, 0.85)

Details:

aligned micrographs of 30 movie frames accumulating 63 electrons per squared Angstrom in a 6 second exposure

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)