The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-03-21 | Taf15 amyloid filaments - Individual 3 [15621 multi-frame micrographs composed of 40 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SYPC, Garringer HJ, Newell KL, Vidal R, Apostolova L, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
2.5 TB | 2.63 Å | |
2024-02-15 | FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS) [1168 micrographs in TIFF format] | Belevich I, Schertel A, Zaversek T, Szyrynska N, Saarnio S, Jokitalo E | 5.2 GB | — | |
2024-01-23 | SPA cryo-EM micrographs of chicken FANCD2-FANCI3D with ds 44-bpDNA [14842 multi-frame micrographs composed of 40 frames each in TIFF format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
2.5 TB | 3.53 Å | |
2024-01-23 | SPA cryo-EM micrographs of chicken FANCD2-FANCI3D alone [1845 multi-frame micrographs composed of 80 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
2.0 TB | 4.1 Å | |
2023-10-31 | Cryo-EM micrographs of AD tau filaments with PET ligand Flortaucipir [1172 multi-frame micrographs composed of 40 frames each in MRC format] | Shi Y, Ghetti B, Goedert M, Scheres S, Lovestam S [Pubmed: 37330290] [DOI: 10.1016/j.jmb.2023.168025] |
278.5 GB | 2.6 Å | |
2023-11-06 | Micrographs of ER-derived vesicles from HEK293F cells [893 multi-frame micrographs composed of 8 frames each in TIFF format] | Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Gröllers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Förster F [Pubmed: 36697828] [DOI: 10.1038/s41586-022-05638-5] |
1.1 TB | 4.5 - 9.3 Å | |
2024-01-23 | SPA cryo-EM micrographs of chicken ubiquitinated FANCD2-FANCI3D with ds 44-bpDNA [6515 multi-frame micrographs composed of 40 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
866.4 GB | 4.4 Å | |
2023-11-13 | Test subset: In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [18 tilt series in MRC format] | Kelley R, Zhang X, Obr M, Khavnekar S, Righetto R, Waltz F, Wietrzynski W, Michael A, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
293.7 GB | — | |
2023-11-06 | Cryo electron microscopy movies of telithromycin bound to the Saccharomyces cerevisiae 80S ribosome (G2400A mutant). [4371 multi-frame micrographs composed of 30 frames each in MRCS format] | Koller TO, Wilson DN [Pubmed: 33990576] [DOI: 10.1038/s41467-021-23068-1] |
363.4 GB | 2.877 Å | |
2024-01-15 | Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — | |
2023-11-06 | Cryo-EM structure of H2DIDS-bound human Anion Exchanger 1 [11020 micrographs in MRC format] | Capper MJ, Yang S, Stone AC, Vatansever S, Zilberg G, Mathiharan YK, Habib R, Hutchinson K, Zhao Y, Schlessinger A, Mezei M, Osman R, Zhang B, Wacker D [Pubmed: 37679563] [DOI: 10.1038/s41594-023-01085-6] |
965.1 GB | 2.98 Å | |
2023-12-04 | Structural architecture of the acidic region of the B domain of coagulation factor V [8429 micrographs in MRC format] | Mohammed BM, Basore K, Summers B, Pelc LA, Di Cera E [Pubmed: 33684942] [DOI: 10.1182/blood.2021010684] |
447.1 GB | 3.05 - 3.3 Å | |
2024-02-28 | Cryo-EM structure of human TFIIIC bound and unbound to tRNA gene [multiple data sets in TIFF and MRCS formats] | Seifert-Davila W, Girbig M, Hauptmann L, Hoffmann T, Eustermann S, Müller CW [Pubmed: 37418517] [DOI: 10.1126/sciadv.adh2019] |
3.8 TB | 3.2 - 3.8 Å | |
2024-01-15 | Structure of Bre1-nucleosome complex [4561 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhao F, Hicks CW, Wolberger C [Pubmed: 37872231] [DOI: 10.1038/s41594-023-01137-x] |
972.6 GB | 3.47 Å | |
2024-03-26 | Single particle movie data of NAIP5/Flic complex [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Paidimuddala B, Cao J, Zhang L [Pubmed: 38055825] [DOI: 10.1126/sciadv.adi8539] |
3.1 TB | 2.93 Å | |
2023-12-04 | Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum [13348 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.7 TB | 2.17 Å | |
2023-12-04 | Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with coenzyme A bound to the E2o domain [12202 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.2 TB | 2.17 Å | |
2023-12-04 | Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å | |
2023-12-04 | Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å | |
2023-12-04 | Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA [11827 multi-frame micrographs composed of 50 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.0 TB | 2.07 Å | |
2024-01-23 | SpCas9 bound to 6 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.5 TB | 3.87 Å | |
2023-12-11 | SpCas9 bound to 12 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.1 TB | 3.64 Å | |
2023-12-11 | SpCas9 bound to 14 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
2.1 TB | 3.49 Å | |
2023-12-11 | SpCas9 bound to 16 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.3 TB | 3.12 Å | |
2023-12-11 | SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å |