Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-12-11 |  |
Single particle dataset of Nora virus [3516 multi-frame micrographs composed of 20 frames each in MRC format] | Laurinmäki P, Shakeel S, Ekstrom JO, Butcher SJ [Pubmed: 33184473] [DOI: 10.1038/s41598-020-76613-1] |
3.6 TB | 2.7 Å |
| 2017-05-24 |  |
Single Particle cryoEM Dataset of TcdA1 in prepore state (SPHIRE tutorial) [97 multi-frame micrographs composed of 24 frames each in MRCS format] | Gatsogiannis C, Roderer D, Raunser S [Pubmed: 28570515] [DOI: 10.3791/55448] |
72.8 GB | 3.5 Å |
| 2018-07-18 |  |
Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome [multiple data sets in MRC and MRCS formats] | Zhu Y, Wang WL, Mao Y [Pubmed: 29636472] [DOI: 10.1038/s41467-018-03785-w] |
2.8 TB | 3.5 - 7.0 Å |
| 2017-08-23 |  |
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle [stack of 117471 particles in MRCS format] | Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y [Pubmed: 28689658] [DOI: 10.1016/j.molcel.2017.06.007] |
70.0 GB | 4.5 - 8.9 Å |
| 2018-01-17 |  |
Serial Block Face Scanning Electron Micrscopy dataset of fetal day 64 guinea pig psoas muscle in transverse [93 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
264.4 MB | — |
| 2017-06-28 |  |
Structure of an ion channel in nano disc [multiple data sets in MRC and MRCS formats] | Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y [Pubmed: 28658211] [DOI: 10.1038/nature22981] |
203.9 GB | 3.55 Å |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2018-01-03 |  |
Structure of the Z-disk isolated from the indirect flight muscle of the honey bee [96 class averages in MRC format] | Rusu M, Hu Z, Taylor KA, Trinick J [Pubmed: 28733815] [DOI: 10.1007/s10974-017-9477-5] |
3.0 GB | 60.0 Å |
| 2017-05-15 |  |
Untilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.2 TB | 4.2 Å |
| 2017-08-16 |  |
40 Degree Tilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.8 TB | 4.2 Å |
| 2018-05-30 |  |
Cryo-ET of natural chromatin from Ostreococcus tauri and Saccharyomyces cerevisiae [25 class averages in MRC format] | Cai S, Song Y, Chen C, Shi J [Pubmed: 29742050] [DOI: 10.1091/mbc.E17-07-0449] |
40.1 GB | — |
| 2017-08-29 |  |
Cryo-EM structure of Hrd1 and Hrd3 complex [multiple data sets in MRC format] | Mi WM, Schoebel SS, Stein AS, Rapoport TAR, Liao ML [Pubmed: 28682307] [DOI: 10.1038/nature23314] |
708.3 GB | 4.7 Å |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 3.1 min after anaphase onset [1652 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
27.0 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 6.3 min after anaphase onset [3206 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
83.2 GB | — |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 3.9 min after anaphase onset [2293 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
26.8 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 4.3 min after anaphase onset [1358 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
14.0 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 5.3 min after anaphase onset [1998 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
31.2 GB | — |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 5.7 min after anaphase onset [2620 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
63.0 GB | — |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 5 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2017-06-01 |  |
The Structure of the Yeast Mitochondrial Ribosome [stack of 2524 particles in MRCS format] | Desai N, Brown A, Amunts A, Ramakrishnan V [Pubmed: 28154081] [DOI: 10.1126/science.aal2415] |
138.6 GB | 3.2 - 4.97 Å |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 11.2 min after anaphase onset [777 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Heriche JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [DOI: 10.1038/s41594-017-0001-9] |
11.0 GB | — |
| 2017-07-14 |  |
Tilt-series for the electron cryotomogram of Vibrio cholerae O395 N1 [16 tilt series in MRC format] | Chang YW, Kjaer A, Ortega DR, Kovacikova G, Sutherland JA, Rettberg LA, Taylor RK, Jensen GJ [Pubmed: 28165453] [DOI: 10.1038/nmicrobiol.2016.269] |
51.3 GB | 50.0 Å |
| 2018-02-08 |  |
Tilt-series of salmonella enterica wild-type bacterial flagellar motor [1 tilt series in MRC format] | Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR [Pubmed: 26976588] [DOI: 10.1073/pnas.1518952113] |
328.0 MB | 69.4 Å |
| 2018-01-24 |  |
Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — |
