Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-01-30 |  |
afTMEM16/nanodisc complex in the absence of Ca2+ [3054 micrographs in MRC format] | Falzone ME, Rheinberger J, Di Lorenzo A, Accardi A [Pubmed: 31278385] [DOI: 10.1038/s41586-019-1377-y] |
162.0 GB | 4.2 Å |
| 2023-06-23 |  |
IgG3-C1-C4b complex on a lipid bilayer [stack of 2561 particles in MRC format] | Abendstein LA, Sharp THS | 160.1 GB | 29.0 - 44.0 Å |
| 2017-03-13 |  |
Bacteriophage P22 mature virion capsid protein [stack of 45150 particles in IMAGIC format] | Hryc CF, Chen D-H, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W [Pubmed: 28270620] [DOI: 10.1073/pnas.1621152114] |
159.4 GB | 3.3 Å |
| 2023-05-12 |  |
Purified human apoferritin tilt series, TomoBEAR benchmark [2089 multi-frame micrographs composed of 10 frames each in TIFF format] | Balyschew N, Yushkevich A, Mikirtumov V, Sanchez RM, Sprink T, Kudryashev M [DOI: 10.1101/2023.01.10.523437] |
159.1 GB | 2.8 Å |
| 2024-02-08 |  |
Cryo electron tomography of whole mitochondria and released crista membranes isolated from Caenorhabditis elegans [multiple data sets in MRC format] | Buzzard E, McLaren M, Gold VAM [Pubmed: 38164968] [DOI: 10.1042/BCJ20230450] |
159.0 GB | 38.6 Å |
| 2016-01-14 |  |
Cryo electron tomography of mouse 5-HT3 receptors in lipid vesicles [46 class averages in MRC format] | Kudryashev M, Castano-Diez D, Deluz C, Hassaine G, Grasso L, Graf-Meyer A, Vogel H, Stahlberg H [Pubmed: 26724993] [DOI: 10.1016/j.str.2015.11.004] |
158.8 GB | 12.0 Å |
| 2023-02-22 |  |
Cryo-EM data of alpha-synuclein A53T fibril induced by CaCl2 [1799 micrographs in MRC format] | Wu KP | 158.0 GB | 2.7 Å |
| 2023-12-11 |  |
SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å |
| 2020-05-01 |  |
SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — |
| 2023-01-17 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 60 eps [869 multi-frame micrographs composed of 20 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
154.5 GB | 1.68 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of cowpea chlorotic mottle virus in laser-melted and revitrified ice [451 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
153.9 GB | 5.2 Å |
| 2023-02-15 |  |
Structural basis of a transcription pre-initiation complex on a divergent promoter [51 tilt series in TIFF format] | Gorbea Colón JJ, Palao L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K [Pubmed: 36731470] [DOI: 10.1016/j.molcel.2023.01.011] |
151.3 GB | 26.0 Å |
| 2022-06-01 |  |
Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome [multiple data sets in TIFF and PNG formats] | Meechan K, Guan W, Riedinger A, Stankova V, Yoshimura A, Pipitone R, Milberger A, Schaar H, Romero-Brey I, Templin R, Peddie C J, Schieber N L, Jones M L, Collinson L, Schwab Y | 151.0 GB | — |
| 2019-01-29 |  |
afTMEM16/nanodisc complex in the presence of Ca2+ [2838 micrographs in MRC format] | Falzone M. E., Accardi A [Pubmed: 30648972] [DOI: 10.7554/eLife.43229] |
150.5 GB | 4.05 Å |
| 2024-05-20 |  |
Cryo-EM micrographs of human α1B/βI+βIVb microtubules bound to GMPCPP decorated with TTLL6 [2770 micrographs in MRC format] | Zehr EA, Roll-Mecak A [Pubmed: 38658656] [DOI: 10.1038/s41589-024-01599-0] |
146.9 GB | 3.6 Å |
| 2019-03-18 |  |
Horse liver alcohol dehydrogenase movies obtained using Talos Arctica operating at 200 kV equipped with a K2 [1153 multi-frame micrographs composed of 44 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 30833564] [DOI: 10.1038/s41467-019-08991-8] |
146.2 GB | 2.9 Å |
| 2021-05-03 |  |
Affinity-purified VgaL in complex with 70S ribosomes from Listeria monocytogenes [1834 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 34117249] [DOI: 10.1038/s41467-021-23753-1] |
146.0 GB | 2.9 Å |
| 2019-02-19 |  |
The 1.54 Å structure of Apoferritin by CRYOARM300 with cold-FEG [972 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato T, Makino F, Nakane T, Terahara N, Kaneko T, Shimizu Y, Motoki S, Ishikawa I, Yonekura K, Namba K [DOI: 10.1017/S1431927619005725] |
145.9 GB | 1.54 Å |
| 2019-06-07 |  |
Scanning electron diffraction data collected from peptide microcrystals [30000 micrographs in DM4 format] | Gallagher-Jones M, Rodriguez JA, Bustillo K, Ophus C [Pubmed: 30675524] [DOI: 10.1038/s42003-018-0263-8] |
144.3 GB | — |
| 2020-04-14 |  |
Cryo-electron tomography of E. coli minicells [17 multi-frame micrographs composed of 5 frames each in MRC format] | Burt A., Desfosses A., Gutsche I., Clare D. K [Pubmed: 32029744] [DOI: 10.1038/s41467-020-14350-9] |
141.7 GB | 16.0 Å |
| 2022-02-07 |  |
Cryo-EM structure of the folate-specific ECF transporter complex in DDM micelles (200 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 34408021] [DOI: 10.1073/pnas.2105014118] |
141.7 GB | 3.4 Å |
| 2021-02-19 |  |
Cryo-EM structure of the mammalian ATP synthase tetramer bound to inhibitory protein IF1 (Part1) [2659 micrographs in MRC format] | Gu J, Zhang L, Zong S, Guo R, Liu T, Yi J, Wang P, Zhuo W, Yang M [Pubmed: 31197009] [DOI: 10.1126/science.aaw4852] |
141.3 GB | 3.34 - 6.2 Å |
| 2024-02-01 |  |
Cryo-EM micrographs of Sweet Potato Mild Mottle Virus [2260 micrographs in MRC format] | Javed A, Byrne MJ, Ranson NA [Pubmed: 37076658] [DOI: 10.1038/s42003-023-04799-x] |
141.3 GB | 2.9 Å |
| 2018-05-11 |  |
T. acidophilum 20S proteasome core movies obtained using Talos Arctica operating at 200 kV equipped with a K2 – stage position used for exposure target navigation [317 multi-frame micrographs composed of 68 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 28991891] [DOI: 10.1038/nmeth.4461] |
140.9 GB | 3.1 Å |
| 2022-06-22 |  |
Processed FIB-SEM images of murine hypothalamus-derived GT1-7 neuronal cells [multiple data sets in TIFF format] | Peddie CJ, Collinson LM [DOI: 10.3389/fcell.2022.819571] |
140.5 GB | — |
