EMPIAR logo

Electron Microscopy Public Image Archive

EMPIAR-10231
Scanning electron diffraction data collected from peptide microcrystals [30000 micrographs in DM4 format]
Publication:

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

Gallagher-Jones M, Ophus C, Bustillo KC, Boyer DR, Panova O, Glynn C, Zee CT, Ciston J, Mancia KC, Minor AM, Rodriguez JA

Communications biology 2 (2019)

PMID: 30675524

Related EMDB entry:
Deposited:
2018-12-06
Released:
2019-06-07
Last modified:
2019-06-07
Imageset size:
144.29 GB
Imageset DOI:
10.6019/EMPIAR-10231
Experimental metadata:
Download xml json
Contains:
  • micrographs - single frame
Image Sets
1. Scanning Diffraction data from QYNNQNNFV peptide microcrystals
Category:
micrographs - single frame
Image format:
DM4
No. of images or tilt series:
30000
Image size:
(1792, 1920)
Pixel type:
SIGNED 16 BIT INTEGER
Pixel spacing:
(None, None)
Details:
Each .dm4 file contains a 4D stack of data with the following dimensions: 1792,1920,scanX,scanY
where the first two dimensions are the detector dimensions and the second two correspond to a real space scan. Each diffraction pattern corresponds to a single 2.5 ms exposure with a total accumulated dose of 1 electron per squared Angstrom.
Software for opening the files and analyzing the image data can be found at:
https://github.com/marcusgj13/4DSTEM_dataAnalysis
Files:
Loading...
Browse All Files
Quick Links
Browse EMPIAR
Sample Preparation Widget
Volume Browser
Tomo Viewer Prototype
Claim entries to your ORCiD
Talks and Tutorials
EMPIAR Quick tour
Publications
Re-use study
Statistics
EMPIAR in the news
Contact us
COVID-19 Data Portal
EMDB
BioImage Archive
PDBe
EMNavigator@PDBj
PDBj
Citations
CryoET-DDM: restoring high-fidelity signals in cryo-electron tomography via a data-driven diffusion model.
Wang X, Li F, Zhang C, Tang S, Jia Z, Hu B, Zhang F, Wan X. (2026)
CryoTriplane: triplane-based neural radiance field representation for high-resolution cryo-EM 3D homogeneous reconstruction.
Cheng Y, He B, Zeng Q, Zhang F, Han R. (2026)
CryoMV: Structure-Prior-Guided Modeling and Real-Particle Validation of Continuous Conformational Transitions in Cryo-EM
Li F, Dong H, Tang S, Wang X, Zhang C, Ji C, Han R, Zhang F, Wan X. (2026)
Structural identification of the RY12 domain of RyR1 as an ADP sensor and the target of the malignant hyperthermia therapeutic dantrolene.
Kim K, Li H, Yuan Q, Melville Z, Zalk R, des Georges A, Frank J, Hendrickson WA, Marks AR, Clarke OB. (2026)
Structural heterogeneity of CTE Type I tau filaments with an interface-shifted polymorph.
Watanabe R, Lee EB. (2026)
Post-acquisition super resolution for cryo-electron microscopy.
Burton Smith RN, Murata K. (2026)
Structural heterogeneity of CTE Type I tau filaments with an interface-shifted polymorph
Watanabe R, Lee EB. (2026)
Agentic cryo-EM structure determination with CryoPilot
--- (2026)
Ligand-induced activation of RyR1 in native membranes.
Mikirtumov V, Golusik S, Huo R, Sprink T, Balyschew N, Yang W, Diebolder C, Yuan S, Kotecha A, Kudryashev M. (2026)
QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning.
Sun Y, Zhao J, Xu N, Wang L, Ding W, Li M. (2026)
See all citations
Protein Data Bank Japan News
[2026-11-11]
273 new PDB entries have been released on 2026-11-11.
[2026-10-21]
Luncheon Seminar at the 'ICBBS2026‘ on 26 November!
[2026-10-20]
[wwPDB] PDB's Emerald Anniversary
[2026-10-15]
[wwPDB] Fifty-five years of collaborative open-access structural biology
[2026-08-28]
[wwPDB] Remediation of Metal-containing PDB Entries and CCDs
[2026-08-18]
[wwPDB] Paper Published about the PDB Beta Archive
[2026-08-16]
[wwPDB] Use Shortlinks to Transition to the PDB Beta Archive
[2026-08-10]
[wwPDB] New tools support deposition of structures to the wwPDB PDB and 3DEM Core Archives directly from structure determination software packages
[2026-08-02]
[wwPDB] wwPDB Events at IUCr
[2026-07-30]
Luncheon Seminar at the 'IIBMP2026‘ on 26 August!
See all news