EMPIAR-10231 - Scanning electron diffraction data collected from peptide microcrystals [30000 micrographs in DM4 format]

EMPIAR-10231

Scanning electron diffraction data collected from peptide microcrystals [30000 micrographs in DM4 format]

Publication:

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

Gallagher-Jones M, Ophus C, Bustillo KC, Boyer DR, Panova O, Glynn C, Zee CT, Ciston J, Mancia KC, Minor AM, Rodriguez JA

Communications biology 2 (2019)

PMID: 30675524

DOI: 10.1038/s42003-018-0263-8

Related EMDB entry:

Deposited:

2018-12-06

Released:

2019-06-07

Last modified:

2019-06-07

Imageset size:

144.29 GB

Imageset DOI:

10.6019/EMPIAR-10231

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Scanning Diffraction data from QYNNQNNFV peptide microcrystals

Category:

micrographs - single frame

Image format:

DM4

No. of images or tilt series:

30000

Image size:

(1792, 1920)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Each .dm4 file contains a 4D stack of data with the following dimensions: 1792,1920,scanX,scanY
where the first two dimensions are the detector dimensions and the second two correspond to a real space scan. Each diffraction pattern corresponds to a single 2.5 ms exposure with a total accumulated dose of 1 electron per squared Angstrom.
Software for opening the files and analyzing the image data can be found at:
https://github.com/marcusgj13/4DSTEM_dataAnalysis

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Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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