EMPIAR-10404 - SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format]

EMPIAR-10404

SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format]

Publication:

SARS-CoV-2 productively infects human gut enterocytes

Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H

Science (---)

PMID: 32358202

DOI: 10.1126/science.abc1669

Related EMDB entry:

Deposited:

2020-04-30

Released:

2020-05-01

Last modified:

2021-06-18

Imageset size:

156.19 GB

Imageset DOI:

10.6019/EMPIAR-10404

Experimental metadata:

Download xml json

Contains:

stitched maps
micrographs - single frame

Image Sets

1. 12448_G1HR - TEM analysis of SARS-CoV-2 infected intestine organoids

Category:

stitched maps

Image format:

TIFF

No. of images or tilt series:

Image size:

(144384, 93184)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(10.0, 10.0)

Details:

Stitched map of TEM analysis of SARS-CoV-2 infected intestine organoids. Stitched map in OME-TIFF pyramidal format (BioFormats 6.0 or higher required for reading file).

The data can be examined in IDR:
https://idr.openmicroscopy.org/search/?query=Name:idr0083
and
https://idr.openmicroscopy.org/webclient/?show=project-1051

Direct links to images:
https://idr.openmicroscopy.org/study/idr0083/figure/4i
https://idr.openmicroscopy.org/study/idr0083/figure/4r

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2. 12448_J1HR - TEM analysis of SARS-CoV-2 infected intestine organoids

Category:

stitched maps

Image format:

TIFF

No. of images or tilt series:

Image size:

(79360, 167424)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(10.0, 10.0)

Details:

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. 12448_G1HR - Raw micrographs used to stitch 12448_G1HR_Mesh003.ome.tif

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

1470

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(10.0, 10.0)

Details:

All raw micrographs used for stitching. Also contains the stage coordinates of each micrograph in xml and matlab format. For each file a log file is available with the settings used.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. 12448_J1HR - Raw micrographs used to stitch 12448_J1HR_Mesh001.ome.tif

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

1400

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(10.0, 10.0)

Details:

All raw micrographs used for stitching. Also contains the stage coordinates of each micrograph in xml and matlab format. For each file a log file is available with the settings used.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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