The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2022-01-12 | FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction [696 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
15.9 GB | — | |
2023-02-17 | Cryo serial FIB/SEM of Rhodospirillum rubrum [43 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.7 GB | — | |
2017-12-18 | CryoET of apoferritin single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
32.9 GB | — | |
2022-01-12 | FIB-SEM of an Mbp-deficient shiverer mouse optic nerve [857 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
18.8 GB | — | |
2023-02-28 | Cryo serial FIB/SEM of HeLa cells [46 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
6.7 GB | — | |
2017-12-18 | CryoET of apoferritin single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
23.0 GB | — | |
2022-01-12 | FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction [747 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [DOI: 10.1101/2020.09.02.279612] |
21.5 GB | — | |
2023-02-28 | Cryo serial FIB/SEM of mouse heart tissue [136 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
18.0 GB | — | |
2018-04-05 | CryoET of apoferritin with 0.5 mM TCEP single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
35.3 GB | — | |
2023-02-28 | Cryo serial FIB/SEM of RPE-1 cells [18 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
826.6 MB | — | |
2017-12-18 | Phase plate cryoET of T20S proteasome single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
23.3 GB | — | |
2022-09-26 | In situ cryo-electron tomography of autophagic structures in S. cerevisiae [84 tilt series in MRC format] | Bieber A, Capitanio C, Erdmann PS, Schulman BA, Baumeister W, Wilfling F [Pubmed: 36122245] [DOI: 10.1073/pnas.2209823119] |
249.0 GB | — | |
2017-12-18 | CryoET of T20S proteasome single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
235.3 GB | — | |
2017-12-18 | CryoET of T20S proteasome single particle [multiple data sets in MRC format] | Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
12.4 GB | — | |
2017-12-18 | CryoET of Mtb 20S proteasome single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
9.1 GB | — | |
2018-03-09 | Apoferritin tutorial dataset for cisTEM [20 multi-frame micrographs composed of 50 frames each in MRC format] | Grant T, Rohou A, Grigorieff N [Pubmed: 29513216] [DOI: 10.7554/elife.35383] |
5.5 GB | — | |
2018-01-03 | 3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles [318 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 2.9 GB | — | |
2023-10-17 | 3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen E. intestinalis [multiple data sets in DM4 format] | Antao NVA, Lam CKL, Davydov AD, Riggi MR, Sall JS, Petzold CP, Liang FL, Iwasa JI, Ekiert DCE, Bhabha GB [Pubmed: 37425741] [DOI: 10.1101/2023.07.02.547383] |
537.9 GB | — | |
2018-01-03 | 3D reconstruction of the cardiac mitochondria in Neaonate and Adult GP cardiomyocyte [262 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.2 GB | — | |
2020-05-01 | SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — | |
2018-01-03 | 3D reconstruction of cardiac mitochondria in earlly prenatal (G55/57) and mid term(G58/60) and term (G66/68) GP cardiomyocyte [341 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.7 GB | — | |
2018-01-03 | Segment /nodes network analysis of the tubular system of the Neonate and Adult GP cardiomyocyte [167 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 787.5 MB | — | |
2018-01-03 | Segment /nodes network analysis of the tubular system of the prenatal stages of GP cardiomyocyte [254 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 1.9 GB | — | |
2023-10-03 | Cryo electron tomography of Cytochalasin D-induced protrusions of Drosophila S2 cells treated with thapsigargin or MG132 [multiple data sets in TIFF and MRC formats] | Ventura Santos C, Carter AP [Pubmed: 37702953] [DOI: 10.15252/embr.202357264] |
107.6 GB | — | |
2018-01-17 | Serial Block Face Scanning Electron Micrscopy dataset of the optic lobe from an adult locust [100 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
3.4 GB | — |