Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-12-04 |  |
Adeno-Associated Virus (AAV-DJ)-Cryo-EM Structure at 1.56 Å Resolution [2241 multi-frame micrographs composed of 200 frames each in TIFF format] | Yoshioka C [Pubmed: 33092282] [DOI: 10.3390/v12101194] |
2.8 TB | 1.56 Å |
| 2022-11-28 |  |
Cryo-EM Structure of Formate Dehydrogenase 1 from Methylorubrum extorquens AM1 [7650 multi-frame micrographs composed of 40 frames each in TIFF format] | Yoshikawa T, Makino F, Miyata T, Suzuki Y, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O [Pubmed: 35535582] [DOI: 10.1039/d2cc01541b] |
1.4 TB | 2.19 Å |
| 2020-02-24 |  |
Electron energy-filtered diffraction (eEFD) of catalase 3D crystal with CRYO ARM 300 [84 micrographs in MRC format] | Yonekura K, Ishikawa T, Maki-Yonekura S [Pubmed: 30928615] [DOI: 10.1016/j.jsb.2019.03.009] |
5.3 GB | — |
| 2021-02-12 |  |
Atomic resolution structure of apoferritin from Titan Mono/BCorr microscope [43292 multi-frame micrographs composed of 40 frames each in MRC format] | Yip KM, Fischer N, Paknia E, Chari A, Stark H [Pubmed: 33087927] [DOI: 10.1038/s41586-020-2833-4] |
18.7 TB | 1.15 - 1.56 Å |
| 2021-02-12 |  |
Single particle cryo-EM dataset of Mus musculus mitochondrial complex I in the deactive state [1768 multi-frame micrographs composed of 30 frames each in MRCS format] | Yin Z, Bridges HR, Grba D, Hirst J, Blaza JN, Agip ANA [Pubmed: 29915388] [DOI: 10.1038/s41594-018-0073-1] |
2.7 TB | 3.17 - 3.9 Å |
| 2021-02-17 |  |
Single particle cryo-EM dataset of Mus musculus mitochondrial complex I with ND6 P25L mutation [1492 multi-frame micrographs composed of 40 frames each in MRC format] | Yin Z, Bridges HR, Grba D, Hirst J [Pubmed: 33514727] [DOI: 10.1038/s41467-021-20942-w] |
3.1 TB | 3.82 Å |
| 2024-02-01 |  |
Cryo-EM structure NDUFS4 knockout complex I from Mus musculus kidney [3373 multi-frame micrographs composed of 59 frames each in MRC format] | Yin Z, Agip ANA, Bridges HR, Hirst J [Pubmed: 38177503] [DOI: 10.1038/s44318-023-00001-4] |
3.8 TB | 6.2 Å |
| 2024-01-15 |  |
Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart [7310 multi-frame micrographs composed of 25 frames each in TIFF format] | Yin Z, Agip ANA, Bridges HR, Hirst J [Pubmed: 38177503] [DOI: 10.1038/s44318-023-00001-4] |
3.2 TB | 3.2 - 4.3 Å |
| 2022-05-17 |  |
Conformational rearrangements upon start codon recognition in human 48S translation initiation complex [multiple data sets in MRC and MRCS formats] | Yi SH, Petrychenko V, Schliep JE, Goyal A, Linden A, Chari A, Urlaub H, Stark H, Rodnina MV, Adio S, Fischer N [Pubmed: 35489072] [DOI: 10.1093/nar/gkac283] |
1.1 TB | 3.7 - 4.7 Å |
| 2022-11-21 |  |
Micrographs of Rigid-Rod Aromatics BP-NBD [5610 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.2 TB | 2.4 Å |
| 2022-11-18 |  |
Micrographs of Rigid-Rod Aromatics pBP-NBD [8261 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.7 TB | 2.4 Å |
| 2021-05-14 |  |
3.9 Angstrom reconstruction of E.coli AcrB embedded in the liposome [5757 multi-frame micrographs composed of 32 frames each in MRCS format] | Yao X, Fan X, Yan N [Pubmed: 32680969] [DOI: 10.1073/pnas.2009385117] |
2.4 TB | 3.9 Å |
| 2022-11-11 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments [10874 multi-frame micrographs composed of 42 frames each in TIFF format] | Yang Y, Shi Y, Schweighauser M, Zhang X, Kotecha A, Murzin AG, Garringer HJ, Cullinane PW, Saito Y, Foroud T, Warner TT, Hasegawa K, Vidal R, Murayama S, Revesz T, Ghetti B, Hasegawa M, Lashley T, Scheres SHW, Goedert M [Pubmed: 36108674] [DOI: 10.1038/s41586-022-05319-3] |
1.2 TB | 2.2 Å |
| 2022-01-25 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with Alzheimer’s disease of amyloid-β 42 filaments [1762 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang Y, Arseni D, Zhang WJ, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew S, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
531.9 GB | 2.5 Å |
| 2022-01-24 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with pathological aging of amyloid-β 42 filaments [1189 multi-frame micrographs composed of 48 frames each in TIFF format] | Yang Y, Arseni D, Zhang W, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew SY, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
1.0 TB | 2.8 Å |
| 2022-11-14 |  |
The structure of PldA-PA3488 complex [3732 micrographs in MRC format] | Yang X, Li Z, Zhao L, She Z, Gao Z, Sui SF, Dong Y, Li Y [Pubmed: 36216841] [DOI: 10.1038/s41467-022-33690-2] |
327.7 GB | 3.05 Å |
| 2020-02-28 |  |
Three-Dimensional Reconstructions of Mouse Circumvallate Taste Buds Using Serial Blockface Scanning Electron Microscopy: I. Cell Types and the Apical Region of the Taste Bud [1194 multi-frame micrographs composed of 1 frames each in TIFF format] | Yang R, Dzowo YK, Wilson CE, Russell RL, Kidd GJ, Salcedo E, Lasher RS, Kinnamon JC, Finger TE [Pubmed: 31587284] [DOI: 10.1002/cne.24779] |
184.9 GB | — |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA [11827 multi-frame micrographs composed of 50 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.0 TB | 2.07 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum [13348 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.7 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with coenzyme A bound to the E2o domain [12202 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.2 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å |
| 2023-04-13 |  |
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2 [18846 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang K, Brunger AT [Pubmed: 36122200] [DOI: 10.1073/pnas.2210990119] |
4.6 TB | 2.22 Å |
| 2023-04-13 |  |
Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
13.5 TB | 2.51 Å |
| 2022-07-22 |  |
Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
32.4 TB | 2.09 - 2.52 Å |
