Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor bafilomycin A [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 6.3 GB | 4.7 - 7.1 Å |
| 2021-08-20 |  |
Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.4 GB | — |
| 2021-11-30 |  |
Entropy Regularized Deconvolution of Cellular Cryo-Transmission Electron Tomograms [3 tilt series in MRC format] | Croxford MW, Elbaum ME, Arigovindan M, Kam Z, Agard DA, Villa E, Sedat J [Pubmed: 34876518] [DOI: 10.1073/pnas.2108738118] |
6.4 GB | — |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina – a 3D electron microscopic study -Scan 1 [1009 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2025-10-15 |  |
Cryo-electron tomography of mitotic chromosomes isolated from chicken DT-40 cells with annotated nucleosome positions [multiple data sets in TIFF, MRCS and MRC formats] | Patra G, Harastani M, Eltsov M [Pubmed: 41044063] [DOI: 10.1038/s41467-025-63895-0] |
6.4 GB | 12.79 - 12.89 Å |
| 2022-01-12 |  |
In vivo architecture of the polar organizing protein Z (PopZ) meshwork in the Alphaproteobacteria Magnetospirillum gryphiswaldense and Caulobacter crescentus [multiple data sets in MRC format] | Toro-Nahuelpan M, Plitzko JM, Schüler D, Pfeiffer D [Pubmed: 34971672] [DOI: 10.1016/j.jmb.2021.167423] |
6.4 GB | — |
| 2025-06-09 |  |
Scan 6 according to material & methods [972 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2021-08-27 |  |
Cryo-electron tomography of JCVI-Syn3A (large cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.5 GB | — |
| 2025-11-14 |  |
Cryo-tomography of 1.4 nm-HAN-594 labeled nucleosomes inside cells (ExoSloNano) [41 tilt series in TIFF format] | Young LN, Sherard A, Narasimhan M, Flaherty WA, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M | 6.5 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — |
| 2023-02-28 |  |
Cryo serial FIB/SEM of HeLa cells [46 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
6.7 GB | — |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly [670 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
6.7 GB | — |
| 2021-04-30 |  |
FIB-SEM of Tuwongella immobilis - a species of the Planctomycetes phylum [1 multi-frame micrographs composed of 464 frames each in TIFF format] | Andersson SGE, Odelgard A, Dyrhage K, Mahajan M, Seeger C [DOI: 10.3389/fmicb.2021.643045] |
6.7 GB | — |
| 2019-09-27 |  |
Cryo-EM structure of TMV in water [62 multi-frame micrographs composed of 20 frames each in TIFF format] | Weis F, Beckers M, von der Hocht I, Sachse C [Pubmed: 31535454] [DOI: 10.15252/embr.201948451] |
6.8 GB | 1.9 Å |
| 2021-02-12 |  |
Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
6.8 GB | — |
| 2015-10-09 |  |
GroEL dataset - NRAMM (06jul12a) [186 micrographs in MRC format] | Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS [Pubmed: 16762565] [DOI: 10.1016/j.jsb.2006.04.005] |
7.0 GB | 7.8 Å |
| 2022-11-28 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing WT PopZ [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
7.1 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Vero cells [46 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
7.1 GB | — |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [100 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
7.3 GB | 25.0 Å |
| 2025-01-16 |  |
In situ cryo-electron tomograms #1-#3 of native mouse heart muscle from SOLIST procedure. [3 tilt series in MRC format] | Dung NHT, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kelebic N, Coscia F, Erdmann PS [Pubmed: 39271806] [DOI: 10.1038/s41592-024-02384-6] |
7.4 GB | — |
| 2018-08-09 |  |
Three-dimensional nanostructure of an intact microglia cell [multiple data sets in TIFF and Other formats] | Bolasco G, Weinhard L, Boissonnet T, Neujahr R, Gross CT [DOI: 10.3389/fnana.2018.00105] |
7.4 GB | — |
| 2025-06-30 |  |
FIB-SEM Nicotiana benthamiana epidermal cell - conventional acquisition [200 reconstructed volumes in TIFF format] | Czymmek KJ, Burch-Smith T, Hurník Konečná T [DOI: 10.1016/bs.mcb.2023.04.008] |
7.5 GB | — |
| 2024-11-21 |  |
Cryo electron tomography of non-infected cos-7 cells with osmicated very low density lipoprotein [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 7.6 GB | 4.7 - 7.1 Å |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
