Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-04-12 | Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) [13536 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
9.4 TB | 2.8 Å | |
| 2025-07-10 | Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase with NADPH under turnover conditions [22290 multi-frame micrographs composed of 1036 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
9.4 TB | 2.2 Å | |
| 2025-12-22 | Common beta cytokine complex micrographs [multiple data sets in TIFF format] | Caveney NA, Rodriguez GE, Pollmann C, Meyer T, Borowska MT, Wilson SC, Wang N, Xiang X, Householder KD, Tao P, Su LL, Saxton RA, Piehler J, Garcia KC [Pubmed: 38614096] [DOI: 10.1016/j.molcel.2024.03.023] |
9.3 TB | 3.6 - 3.8 Å | |
| 2025-03-21 | Unaligned cryo-EM micrographs of HCN4 channel bound to Ivabradine [31670 multi-frame micrographs composed of 40 frames each in TIFF format] | Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A [Pubmed: 38917012] [DOI: 10.1073/pnas.2402259121] |
9.3 TB | 3.6 Å | |
| 2026-06-04 | Cryo Electron Microscopy micrographs of MRP2 bound to Leukotriene C4 [18196 multi-frame micrographs composed of 36 frames each in EER format] | Koide EK, Pietz HLP, Beltran JB, Chen JC [Pubmed: 39779684] [DOI: 10.1038/s41467-024-55810-w] |
9.3 TB | 2.75 Å | |
| 2022-08-16 | Cryo-EM structure of the human GS-GN complex in the inhibited state [multiple data sets in EER and MRC formats] | Marr L, Biswas D, Daly LA, Browning C, Vial SCM, Maskell DP, Hudson C, Bertrand JA, Pollard J, Ranson NA, Khatter H, Eyers CE, Sakamoto K, Zeqiraj E [Pubmed: 35690592] [DOI: 10.1038/s41467-022-31109-6] |
9.2 TB | 2.62 Å | |
| 2020-07-06 | Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format] | Greber BJ, Toso DB, Fang J, Nogales E [Pubmed: 30860024] [DOI: 10.7554/eLife.44771] |
9.2 TB | 3.7 Å | |
| 2026-02-10 | In situ structure of bacterial 50S ribosomes [28790 multi-frame micrographs composed of 980 frames each in EER format] | Al‐Amoudi A, Baradaran R, Yuan X, Wú F, Naschberger A [Pubmed: 41476251] [DOI: 10.1038/s42003-025-09441-6] |
9.1 TB | 2.3 - 3.25 Å | |
| 2025-11-04 | Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
9.1 TB | 4.0 Å | |
| 2024-04-12 | Structural basis for directional rotation of the Salmonella flagellum [34381 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
9.1 TB | 3.4 - 6.7 Å | |
| 2025-12-22 | Complex of BREX proteins BrxB and PglZ from Salmonella typhimurium [multiple data sets in MRC and TIFF formats] | Doyle LA, Stoddard BL, Kaiser BK, Blower TR [Pubmed: 40548935] [DOI: 10.1093/nar/gkaf540] |
9.1 TB | 4.45 Å | |
| 2024-10-10 | Structural basis for directional rotation of the Salmonella flagellum [39322 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
9.1 TB | 3.4 - 6.7 Å | |
| 2021-02-12 | cryo-EM single particle dataset of a DNA nanostructure called "The Pointer-v2" [2381 multi-frame micrographs composed of 62 frames each in MRCS format] | Kube M, Kohler F, Feigl E, Nagel-Yüksel B, Willner EM, Funke JJ, Gerling T, Stömmer P, Honemann MN, Martin TG, Scheres SHW, Dietz H [Pubmed: 33277481] [DOI: 10.1038/s41467-020-20020-7] |
9.0 TB | 7.4 Å | |
| 2024-03-22 | Structural basis for directional rotation of the Salmonella flagellum [39332 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
9.0 TB | 3.4 - 6.7 Å | |
| 2023-04-12 | LRRC8A-BRIL:C Heteromer in GDN [multiple data sets in TIFF and MRCS formats] | Kern DM, Brohawn SG [Pubmed: 36928458] [DOI: 10.1038/s41594-023-00944-6] |
8.9 TB | 2.95 - 4.16 Å | |
| 2026-06-08 | Time-resolved cryo-EM particle stacks [multiple data sets in MRC format] | Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS [Pubmed: 40631248] [DOI: 10.1101/2025.07.04.663231] |
8.9 TB | 2.03 Å | |
| 2022-12-12 | E.coli RNaseP ES complex with GG_ptRNA substrate in the presence of Ca2+ [14541 multi-frame micrographs composed of 60 frames each in TIFF format] | Huang W [Pubmed: 36045135] [DOI: 10.1038/s41467-022-32843-7] |
8.9 TB | 3.4 Å | |
| 2025-07-25 | Single particle cryoEM data of Human OGG1 bound at the nucleosomal DNA entry site [17116 multi-frame micrographs composed of 75 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
8.9 TB | 3.2 Å | |
| 2021-05-10 | Yeast C, Ci, C*, and P complex spliceosomes [multiple data sets in TIFF and MRCS formats] | Wilkinson ME, Fica SM, Galej WP, Nagai K [Pubmed: 27459055] [DOI: 10.1038/nature19316] |
8.9 TB | 2.8 - 10.0 Å | |
| 2025-04-15 | Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL [26318 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
8.8 TB | 3.5 Å | |
| 2025-08-13 | Cryo-EM images of alpha-synuclein fibrils «1B» capable of seeding GCI in vivo [multiple data sets in MRC and EER formats] | Burger D, Kashyrina M, Lewis A, De Nuccio F, Mohammed I, de La Seigliere H, van den Heuvel L, Feuillie C, Verchere J, Berbon M, Arotcarena M, Retailleau A, Bezard E, Laferriere F, Loquet A, Bousset L, Baron T, Lofrumento DD, De Giorgi F, Stahlberg H, Ichas F [DOI: 10.1101/2024.07.01.601498] |
8.8 TB | 1.93 Å | |
| 2023-07-18 | Human alpha-catenin monomer [multiple data sets in MRC and TIFF formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36928388] [DOI: 10.1038/s42003-023-04610-x] |
8.7 TB | 6.9 Å | |
| 2021-10-26 | The CryoEM Structure of Drosophila Flight Muscle Thick Filaments at 7Å Resolution [1510 multi-frame micrographs composed of 44 frames each in MRC format] | Daneshparvar N, Taylor DW, O'Leary TS, Rahmani H, Abbasiyeganeh F, Previs MJ, Taylor KA [Pubmed: 32718994] [DOI: 10.1101/2020.06.05.136580] |
8.7 TB | 7.0 - 8.0 Å | |
| 2026-04-08 | Cryo-EM structure of the aspartate:alanine antiporter AspT WT [12357 multi-frame micrographs composed of 40 frames each in TIFF format] | Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S [Pubmed: 40998974] [DOI: 10.1038/s42003-025-08676-7] |
8.7 TB | 3.4 Å | |
| 2022-06-13 | Structure of bile acid transporter NTCP [multiple data sets in TIFF format] | Asami J, Shimizu T, Ohto U [Pubmed: 35580629] [DOI: 10.1038/s41586-022-04845-4] |
8.6 TB | 3.11 - 3.55 Å |