Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-02-09 |  |
5-HT2B receptor bound to LSD in complex with heterotrimeric mini-Gq protein obtained by cryo-electron microscopy (cryoEM) [3916 multi-frame micrographs composed of 57 frames each in TIFF format] | Barros-Alvarez X [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
2.0 TB | 2.9 Å |
| 2024-02-09 |  |
5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM) [9617 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
5.0 TB | 3.3 Å |
| 2022-07-01 |  |
Single-particle cryo-EM dataset of the Vairimorpha necatrix ribosome [3284 multi-frame micrographs composed of 32 frames each in TIFF format] | Barandun J, Hunziker M, Vossbrinck CR, Klinge S [Pubmed: 31332387] [DOI: 10.1038/s41564-019-0514-6] |
1.0 TB | 3.26 - 3.7 Å |
| 2023-02-10 |  |
A surface morphometrics toolkit to quantify organellar membrane ultrastructure using cryo-electron tomography [multiple data sets in MRC format] | Barad BA, Medina M, Fuentes D, Wiseman RL, Grotjahn DA [DOI: 10.1101/2022.01.23.477440] |
126.9 GB | — |
| 2023-07-31 |  |
Cryo-EM micrographs of AvECN cytochrome nanowires [2572 multi-frame micrographs composed of 40 frames each in TIFF format] | Baquero DP, Cvirkaite-Krupovic V, Egelman EH, Krupovic M, Wang F [Pubmed: 37290436] [DOI: 10.1016/j.cell.2023.05.012] |
555.1 GB | 3.9 Å |
| 2022-12-16 |  |
Amyloid fibril structure from the vascular variant of systemic AA amyloidosis [multiple data sets in TIFF format] | Banerjee S, Baur J, Daniel C, Pfeiffer PB, Hitzenberger M, Kuhn L, Wiese S, Bijzet J, Haupt C, Amann KU, Zacharias M, Hazenberg BPC, Westermark GT, Schmidt M, Fändrich M [Pubmed: 36433936] [DOI: 10.1038/s41467-022-34636-4] |
1009.8 GB | 2.56 Å |
| 2022-07-27 |  |
Apoferritin structure at 1.46 angstrom resolution by CryoARM300II equipped with Apollo [7000 multi-frame micrographs composed of 24 frames each in TIFF format] | Bammes B, Spilman M, Sakamoto M, Fukumura T, Konyuba Y, Okunish E | 1.1 TB | 1.47 Å |
| 2023-05-12 |  |
Purified human apoferritin tilt series, TomoBEAR benchmark [2089 multi-frame micrographs composed of 10 frames each in TIFF format] | Balyschew N, Yushkevich A, Mikirtumov V, Sanchez RM, Sprink T, Kudryashev M [DOI: 10.1101/2023.01.10.523437] |
159.1 GB | 2.8 Å |
| 2023-07-25 |  |
AP2 bound to MSP1 lipid nanodisc with tyrosine cargo peptide [2918 multi-frame micrographs composed of 60 frames each in TIFF format] | Baker RW, Cannon KS, Sarsam RD [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
1.0 TB | 4.9 Å |
| 2023-07-25 |  |
AP2 bound to MSPE3D1 lipid nanodisc [9550 multi-frame micrographs composed of 60 frames each in TIFF format] | Baker RW, Cannon KS, Sarsam RD [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
2.7 TB | 5.4 Å |
| 2023-07-25 |  |
AP2 bound to MSP2N2 lipid nanodisc [7698 multi-frame micrographs composed of 60 frames each in TIFF format] | Baker RW, Cannon KS, Sarsam RD [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
2.1 TB | 3.9 Å |
| 2023-07-25 |  |
AP2 bound to MSP2N2 lipid nanodisc with tyrosine cargo peptide [4650 multi-frame micrographs composed of 60 frames each in TIFF format] | Baker RW, Cannon KS, Sarsam RD [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
1.4 TB | 3.3 - 3.4 Å |
| 2023-07-25 |  |
AP2 bound to MSP1 lipid nanodisc [5250 multi-frame micrographs composed of 60 frames each in TIFF format] | Baker RW, Cannon KS, Sarsam RD [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
1.5 TB | 4.2 Å |
| 2023-07-25 |  |
AP2 bound to MSPE3D1 lipid nanodisc with tyrosine cargo peptide [12075 micrographs in MRC format] | Baker RW, Cannon KS, Sarsam R [Pubmed: 37364761] [DOI: 10.1016/j.jsb.2023.107989] |
1.0 TB | 6.8 Å |
| 2023-10-13 |  |
cryo-EM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167 [20590 micrographs in MRC format] | Bajic G [Pubmed: 38054729] [DOI: 10.1128/mbio.02477-23] |
1.8 TB | 3.16 Å |
| 2018-06-20 |  |
An atomic structure of human gamma-secretase [2925 multi-frame micrographs composed of 20 frames each in MRCS format] | Bai XC, Yan C, Yang G, Lu P, Ma D, Sun L, Zhou R, Scheres SHW, Shi Y [Pubmed: 26280335] [DOI: 10.1038/NATURE14892] |
11.7 TB | 3.4 Å |
| 2013-07-06 |  |
S.cereviseae 80S ribosome direct electron detetector dataset [260 multi-frame micrographs composed of 16 frames each in MRCS format] | Bai XC, Fernandez IS, McMullan G, Scheres SH [Pubmed: 23427024] [DOI: 10.7554/eLife.00461] |
260.0 GB | 4.5 Å |
| 2023-09-21 |  |
Single-particle cryo-EM dataset of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S [Pubmed: 38307862] [DOI: 10.1038/s41467-024-45237-8] |
8.3 TB | 3.0 Å |
| 2021-01-29 |  |
Single-particle cryo-EM dataset of the complex between a nucleosome and the regulatory linker of ALC1 [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S [Pubmed: 33357431] [DOI: 10.1016/j.celrep.2020.108529] |
6.8 TB | 2.5 - 3.0 Å |
| 2023-07-25 |  |
Single-particle cryo-EM dataset of the complex between ALC1 and a PARylated nucleosome [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S [Pubmed: 34486521] [DOI: 10.7554/eLife.71420] |
14.9 TB | 4.8 - 10.0 Å |
| 2021-12-14 |  |
Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy [6 multi-frame micrographs composed of 1 frames each in TIFF format] | Ayuso-Jimeno IP, Ronchi P, Wang T, Gallori CE, Gross CT [Pubmed: 35715545] [DOI: 10.1038/s41598-022-14309-4] |
68.7 GB | — |
| 2018-01-22 |  |
Human TRPM4 ion channel in a lipid nanodisc in a calcium-free state [stack of 45247 particles in MRCS format] | Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y [Pubmed: 29217581] [DOI: 10.1126/science.aar4510] |
162.5 GB | 3.2 Å |
| 2018-01-22 |  |
Human TRPM4 ion channel in a lipid nanodisc in a calcium-bound state [stack of 221100 particles in MRCS format] | Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y [Pubmed: 29217581] [DOI: 10.1126/science.aar4510] |
84.4 GB | 3.1 Å |
| 2022-04-06 |  |
CryoEM Structure of the, UND-PP bound, WaaL O-Antigen Ligase [2378 multi-frame micrographs composed of 50 frames each in MRC format] | Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper DI, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F [Pubmed: 35388216] [DOI: 10.1038/s41586-022-04555-x] |
477.2 GB | 3.23 Å |
| 2022-06-13 |  |
Structure of bile acid transporter NTCP [multiple data sets in TIFF format] | Asami J, Shimizu T, Ohto U [Pubmed: 35580629] [DOI: 10.1038/s41586-022-04845-4] |
8.6 TB | 3.11 - 3.55 Å |
