Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-10-22 |  |
A multi-scale model of the yeast chromosome-segregation system [40 tilt series in MRC format] | Ng C, Deng L, Chen C, Lim H, Shi J, Surana U [Pubmed: 30504246] [DOI: 10.1083/jcb.201809088] |
95.4 GB | 32.0 Å |
| 2023-02-28 |  |
GroEL on EG-grid [531 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
95.2 GB | 1.99 Å |
| 2019-05-02 |  |
Cryo-EM structure of TRPV5 W583A in nanodisc [stack of 385896 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
94.4 GB | 2.8 Å |
| 2024-01-16 |  |
Cryo Electron tomography of germinated polar tubes from Vairimorpha necatrix [multiple data sets in MRC format] | Sharma H, Jespersen N, Ehrenbolger K, Carlson L.A., Barandun J [DOI: 10.1101/2023.05.31.543061] |
94.1 GB | 46.0 Å |
| 2022-03-21 |  |
CryoET of E. coli prepared with the Waffle Method [1504 multi-frame micrographs composed of 14 frames each in TIFF format] | Kelley K, Raczkowski AM, Klykov O, Jaroenlak P, Bobe D, Kopylov M, Eng ET, Bhabha G, Potter CS, Carragher B, Noble AJ [Pubmed: 35387991] [DOI: 10.1038/s41467-022-29501-3] |
94.0 GB | — |
| 2020-02-07 |  |
FIB-SEM of a HeLa cell [multiple data sets in TIFF format] | Hennies J, Lleti JMS, Schieber NL, Templin RM, Steyer AM, Schwab Y [Pubmed: 32029771] [DOI: 10.1038/s41598-020-58736-7] |
94.0 GB | — |
| 2016-06-07 |  |
Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc [multiple data sets in MRC format] | Gao Y [Pubmed: 27281200] [DOI: 10.1038/nature17964] |
93.8 GB | 2.95 Å |
| 2021-05-14 |  |
TSC complex particles [1767 micrographs in MRC format] | Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G [Pubmed: 33307091] [DOI: 10.1016/j.jmb.2020.166743] |
93.7 GB | 4.2 Å |
| 2016-03-16 |  |
Cryo-EM dataset of T20S proteasome [293 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
93.3 GB | 3.1 Å |
| 2023-03-27 |  |
Cryo electron microscopy of beta-2-microglobulin amyloid fibrils for the variant V27M (in vitro, pH 6.2) [611 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson M, Gallardo RU, Martinez RM, Guthertz N, So M, Aubrey LD, Radford SE, Ranson NA [Pubmed: 36864041] [DOI: 10.1038/s41467-023-36791-8] |
92.7 GB | 2.8 Å |
| 2016-11-10 |  |
Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å |
| 2020-03-04 |  |
Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy [1713 micrographs in MRC format] | Guerrero-Ferreira R, Taylor NM, Arteni AA, Kumari P, Mona D, Ringler P, Britschgi M, Lauer ME, Makky A, Verasdonck J, Riek R, Melki R, Meier BH, Böckmann A, Bousset L, Stahlberg H [Pubmed: 31815671] [DOI: 10.7554/eLife.48907] |
90.9 GB | 2.98 - 3.4 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: E.coli cryo-FIB lamellae multishot [30 tilt series in MRC format] | Khavnekar S, Erdmann PS, Plitzko JM [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] |
90.7 GB | 8.8 Å |
| 2022-03-14 |  |
SBF SEM of Human term placental villi [multiple data sets in TIFF format] | Lewis RM [DOI: 10.1101/2022.01.26.477815] |
90.2 GB | — |
| 2018-01-26 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [435 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
89.4 GB | 4.4 Å |
| 2022-03-04 |  |
Cryo-electron tomographs of mouse hippocampal neurons [63 reconstructed volumes in MRC format] | Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertümpfel C, Mizuno N [Pubmed: 35262630] [DOI: 10.1083/jcb.202106086] |
88.6 GB | — |
| 2023-03-15 |  |
Performing Correlative Light and Electron Microscopy to reveal the structural organization and location of alpha-synuclein aggregation hotspots inside the neuron. [multiple data sets in DM4 and TIFF formats] | Choi ML, Chappard A, Singh BP, Maclachlan C, Rodrigues M, Fedotova E, Berezhnov AV, De S, Peddie C, Athauda D, Viridi GS, Zhang W, Evans JR, Wernick A, Zanjani ZS, Angelova PR, Esteras N, Vinikurov A, Morris K, Jeacock K, Tosatto L, Little D, Gissen P, Collinson L, Clarke DJ, Kunath T, Klenerman D, Abramov AY, Horrocks MH, Gandhi S [DOI: 10.1101/2022.06.07.494932] |
88.4 GB | — |
| 2019-10-09 |  |
Single particle cryo-EM dataset of the triskelion hub subparticle extraction from clathrin cages [multiple data sets in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
88.4 GB | 4.69 - 7.79 Å |
| 2020-10-09 |  |
Single particle cryo electron microscopy of aldolase (rabbit, muscle) using beam-tilt on Talos Arctica [1625 micrographs in MRC format] | Kearns S, Cianfrocco MA [Pubmed: 33209328] [DOI: 10.1107/S2052252520013482] |
87.6 GB | 2.8 - 4.9 Å |
| 2020-12-09 |  |
SA-like and SD-like states of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin (dataset 1) [1645 micrographs in MRC format] | Chen X, Walters KJ [Pubmed: 32783951] [DOI: 10.1016/j.str.2020.07.011] |
87.3 GB | 6.47 - 6.75 Å |
| 2018-06-13 |  |
Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å |
| 2021-06-04 |  |
Cryo-EM structure of human rod CNGA1 channel in apo-state [stack of 274333 particles in MRCS format] | Xue J, Han Y, Zeng W, Wang Y, Jiang Y [Pubmed: 33651975] [DOI: 10.1016/j.neuron.2021.02.007] |
84.9 GB | 2.6 Å |
| 2020-02-07 |  |
FIB-SEM of parapodia from Platynereis dumerilii [multiple data sets in TIFF format] | Hennies J, Lleti JMS, Schieber NL, Templin RM, Steyer AM, Schwab Y [Pubmed: 32029771] [DOI: 10.1038/s41598-020-58736-7] |
84.9 GB | — |
| 2018-01-22 |  |
Human TRPM4 ion channel in a lipid nanodisc in a calcium-bound state [stack of 221100 particles in MRCS format] | Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y [Pubmed: 29217581] [DOI: 10.1126/science.aar4510] |
84.4 GB | 3.1 Å |
| 2020-12-04 |  |
Tilt series of native M. pneumoniae cells treated with chloramphenicol [2666 tilt series in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
83.8 GB | 3.4 - 3.7 Å |
