Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-01-13 |  |
Ribosome sample deposited using the chameleon (54 ms delay) [1569 multi-frame micrographs composed of 59 frames each in MRCS format] | Klebl DP, Gravett MSC, Kontziampasis D, Wright DJ, Bon RS, Monteiro DCF, Trebbin M, Sobott F, White HD, Darrow MC, Thompson RF, Muench SP [Pubmed: 32814033] [DOI: 10.1016/j.str.2020.07.018] |
2.8 TB | 7.1 Å |
| 2020-12-18 |  |
Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling [1 multi-frame micrographs composed of 1 frames each in MRCS format] | Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuehlbrandt W [Pubmed: 31221832] [DOI: 10.1126/science.aaw9128] EMD-4806 EMD-4807 EMD-4856 EMD-4857 EMD-4808 EMD-4809 EMD-4810 EMD-4811 EMD-4812 EMD-4813 EMD-4814 EMD-4815 EMD-4816 EMD-4817 EMD-4818 EMD-4819 EMD-4820 EMD-4821 EMD-4822 EMD-4823 EMD-4824 EMD-4825 EMD-4826 EMD-4827 EMD-4828 EMD-4829 EMD-4830 EMD-4831 EMD-4832 EMD-4833 EMD-4834 EMD-4835 EMD-4836 EMD-4837 EMD-4838 EMD-4839 EMD-4840 EMD-4841 EMD-4842 EMD-4843 EMD-4844 EMD-4845 EMD-4846 EMD-4847 EMD-4848 EMD-4849 EMD-4850 EMD-4851 EMD-4852 EMD-4853 EMD-4854 EMD-4855 EMD-4805 |
19.1 TB | 2.69 - 4.3 Å |
| 2022-12-09 |  |
S-(+)-ketamine bound GluN1a-GluN2B NMDA receptors at 3.69 Angstrom resolution [multiple data sets in TIFF format] | Chou THC, Furukawa FH [Pubmed: 35637422] [DOI: 10.1038/s41594-022-00772-0] |
2.3 TB | 3.69 Å |
| 2022-09-09 |  |
S. cerevisiae Gea2 [multiple data sets in TIFF format] | Muccini AJ, Fromme JC [Pubmed: 36044848] [DOI: 10.1016/j.celrep.2022.111282] |
7.4 TB | 3.9 - 4.7 Å |
| 2013-07-06 |  |
S.cereviseae 80S ribosome direct electron detetector dataset [260 multi-frame micrographs composed of 16 frames each in MRCS format] | Bai XC, Fernandez IS, McMullan G, Scheres SH [Pubmed: 23427024] [DOI: 10.7554/eLife.00461] |
260.0 GB | 4.5 Å |
| 2020-12-09 |  |
SA-like and SD-like states of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin (dataset 1) [1645 micrographs in MRC format] | Chen X, Walters KJ [Pubmed: 32783951] [DOI: 10.1016/j.str.2020.07.011] |
87.3 GB | 6.47 - 6.75 Å |
| 2020-12-09 |  |
SA-like and SD-like states of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin (dataset 2) [6220 micrographs in MRC format] | Chen X, Walters KJ [Pubmed: 32783951] [DOI: 10.1016/j.str.2020.07.011] |
330.2 GB | 5.8 - 5.96 Å |
| 2020-12-09 |  |
SA-like and SD-like states of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A [6216 micrographs in MRC format] | Chen X, Walters KJ [Pubmed: 32783951] [DOI: 10.1016/j.str.2020.07.011] |
330.3 GB | 4.1 - 5.7 Å |
| 2020-06-19 |  |
SARS-CoV-2 ORF3a dimer in an MSP1E3D1 lipid nanodisc [6309 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG [Pubmed: 34158638] [DOI: 10.1038/s41594-021-00619-0] |
4.4 TB | 2.9 Å |
| 2020-06-19 |  |
SARS-CoV-2 ORF3a dimer with added Emodin in an MSP1E3D1 lipid nanodisc [6750 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG [Pubmed: 34158638] [DOI: 10.1038/s41594-021-00619-0] |
4.5 TB | 3.7 Å |
| 2022-10-07 |  |
SARS-CoV-2 S Omicron Spike B.1.1.529 [multiple data sets in MRC and EER formats] | Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D [DOI: 10.1101/2021.12.27.474250] |
8.2 TB | 3.02 Å |
| 2020-11-18 |  |
SARS-CoV-2 infection in human adult lung alveolar stem cells [multiple data sets in TIFF format] | Youk J, Kim T, Evans KV, Jeong YI, Hur Y, Hong SP, Kim JH, Yi K, Kim SY, Na KJ, Bleazard T, Kim HM, Fellows M, Mahbubani KT, Saeb-Parsy K, Kim SY, Kim YT, Koh GY, Choi BS, Ju YS, Lee JH [Pubmed: 33142113] [DOI: 10.1016/j.stem.2020.10.004] |
20.8 GB | — |
| 2020-05-01 |  |
SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — |
| 2023-02-28 |  |
SARS-CoV-2 spike protein (1-up RBD) on EG-grid [1495 multi-frame micrographs composed of 60 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
373.0 GB | 3.1 Å |
| 2023-02-28 |  |
SARS-CoV-2 spike protein (1-up RBD) on Quantifoil grid [2403 multi-frame micrographs composed of 60 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
594.8 GB | 3.23 Å |
| 2022-05-25 |  |
SARS-CoV-2 spike protein S:D614G + S:A222V variant [4841 micrographs in MRC format] | Ginex T, Marco-Marín C, Wieczór M, Mata CP, Krieger J, Ruiz-Rodriguez P, López-Redondo ML, Francés-Gómez C, Melero R, Sánchez-Sorzano CÓ, Martínez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llácer JL, Carazo JM [Pubmed: 35816514] [DOI: 10.1371/journal.ppat.1010631] |
303.8 GB | 3.4 Å |
| 2020-12-09 |  |
SBF SEM images of a Zebrafish hindbrain containing several Toxoplasma gondii tachizoites at different stages of replication [multiple data sets in DM4 and TIFF formats] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
175.2 GB | — |
| 2021-10-27 |  |
SBF SEM images of a Zebrafish hindbrain containing several Toxoplasma gondii tachizoites at different stages of replication [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
553.9 GB | — |
| 2021-01-22 |  |
SBF SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
16.5 GB | — |
| 2020-12-09 |  |
SBF SEM images of a Zebrafish hindbrain macrophage containing a replicating Toxoplasma gondii tachizoite [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
338.4 GB | — |
| 2022-03-14 |  |
SBF SEM of Human term placental villi [multiple data sets in TIFF format] | Lewis RM [DOI: 10.1101/2022.01.26.477815] |
90.2 GB | — |
| 2024-02-09 |  |
SBF-SEM imaging of Leishmania mexicana culture derived promastigotes [708 multi-frame micrographs composed of 1 frames each in MRC format] | Hair M [DOI: 10.1101/2023.11.28.568992] |
131.9 GB | — |
| 2023-10-13 |  |
SBF-SEM micrographs of A. algerae microsporidia spores, 45 min germination [300 micrographs in TIFF format] | Davydov A, Jaroenlak P, Ekiert D, Bhabha G [DOI: 10.7554/eLife.86638.1] |
55.9 GB | — |
| 2023-10-13 |  |
SBF-SEM micrographs of A. algerae microsporidia spores, 5 min germination [1215 micrographs in TIFF format] | Davydov A, Jaroenlak P, Ekiert D, Bhabha G [DOI: 10.7554/eLife.86638.1] |
226.3 GB | — |
| 2023-10-10 |  |
SBF-SEM micrographs of A. algerae spores, Ungerminated [250 micrographs in TIFF format] | Jaroenlak P, Cammer M, Davydov A, Sall J, Usmani M, Liang F, Ekiert D, Bhabha G [Pubmed: 32946515] [DOI: 10.1371/journal.ppat.1008738] |
46.6 GB | — |
