EMPIAR-10967 - SBF SEM of Human term placental villi [multiple data sets in TIFF format]

EMPIAR-10967

SBF SEM of Human term placental villi [multiple data sets in TIFF format]

Publication:

3D Visualisation of trans-syncytial nanopores provides a pathway for paracellular diffusion across the human placental syncytiotrophoblast

Lewis RM, Baskaran H, Green J, Tashev S, Paleologou E, Lofthouse EM, Cleal JK, Page A, Chatelet DS, Goggin P, Sengers BG

bioRxiv (2022)

DOI: 10.1101/2022.01.26.477815

Related EMDB entry:

Deposited:

2022-01-24

Released:

2022-03-14

Last modified:

2022-03-14

Imageset size:

90.16 GB

Imageset DOI:

10.6019/EMPIAR-10967

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. SBFSEM image series showing term human placental villi (Stack 12)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

337

Image size:

(3000, 3000)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(4.2, 4.2)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. SBFSEM image series showing term human placental villi (Stack 13)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

1000

Image size:

(3000, 1)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(4.2, 4.2)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. SBFSEM image series showing term human placental villi (Stack 10)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

778

Image size:

(3000, 3000)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(4.2, 4.2)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. SBFSEM image series showing term human placental villi (Stack 15)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

1139

Image size:

(3000, 3000)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(5.7, 5.7)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. SBFSEM image series showing term human placental villi (Stack 26)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

200

Image size:

(2000, 2000)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(24.0, 24.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. SBFSEM image series showing term human placental villi (Stack 32)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

1000

Image size:

(2000, 2000)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(6.0, 6.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

7. SBFSEM image series showing term human placental villi (Stack 34)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

584

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(3.0, 3.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

8. SBFSEM image series showing term human placental villi (Stack 37)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(5.0, 5.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

9. SBFSEM image series showing term human placental villi (Stack 38)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

307

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(5.0, 5.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

10. SBFSEM image series showing term human placental villi (Stack 40)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

400

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(5.0, 5.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

11. SBFSEM image series showing term human placental villi (Stack 39)

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

100

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(5.0, 5.0)

Details:

Sequential series of SBFSEM images of term human placental villi from uncomplicated pregnancy. z = 50 nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

See all citations

Protein Data Bank Japan News

[2024-05-08]

376 new PDB entries have been released on 2024-05-08.

[2024-04-09]

[wwPDB] CASP16 Call for Targets

[2024-04-02]

Announcement of the PDBj Newsletter Vol.24 release

[2024-03-21]

[wwPDB] Paper Published on NMR Restraint Validation

[2024-03-13]

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

[2024-03-06]

[wwPDB] Poster Prize Awarded at The Biophysical Society Meeting

[2024-02-15]

Notice of Service Suspension (ASH, DASH, SeSAW, MAFFTash, Spanner, SFAS)

[2024-02-13]

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

[2024-02-06]

[wwPDB] Preprint Published on NMR Restraint Validation

[2024-02-05]

[wwPDB] Preprint Published on CryoEM Archiving and Validation Recommendations

See all news