Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-10-04 |  |
Particle stack from TRPM8 bound to calcium dataset [multiple data sets in MRC format] | Diver MM, Cheng Y, Julius D [Pubmed: 31488702] [DOI: 10.1126/science.aax6672] |
129.7 GB | 3.2 Å |
| 2022-06-13 |  |
Particle stacks for VcINDY in 300mM NaCl [stack of 144865 particles in MRC format] | Sauer DB, Marden JJ, Song JM, Wang DN [Pubmed: 35551191] [DOI: 10.1038/s41467-022-30406-4] |
35.4 GB | 2.83 Å |
| 2022-06-13 |  |
Particle stacks for VcINDY in Choline Chloride [multiple data sets in MRC format] | Sauer DB, Marden JJ, Song JM, Wang DN [Pubmed: 35551191] [DOI: 10.1038/s41467-022-30406-4] |
383.6 GB | 3.23 Å |
| 2023-03-15 |  |
Performing Correlative Light and Electron Microscopy to reveal the structural organization and location of alpha-synuclein aggregation hotspots inside the neuron. [multiple data sets in DM4 and TIFF formats] | Choi ML, Chappard A, Singh BP, Maclachlan C, Rodrigues M, Fedotova E, Berezhnov AV, De S, Peddie C, Athauda D, Viridi GS, Zhang W, Evans JR, Wernick A, Zanjani ZS, Angelova PR, Esteras N, Vinikurov A, Morris K, Jeacock K, Tosatto L, Little D, Gissen P, Collinson L, Clarke DJ, Kunath T, Klenerman D, Abramov AY, Horrocks MH, Gandhi S [DOI: 10.1101/2022.06.07.494932] |
88.4 GB | — |
| 2017-12-18 |  |
Phase plate cryoET of T20S proteasome single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
23.3 GB | — |
| 2020-07-06 |  |
Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format] | Greber BJ, Toso DB, Fang J, Nogales E [Pubmed: 30860024] [DOI: 10.7554/eLife.44771] |
9.2 TB | 3.7 Å |
| 2022-12-12 |  |
Phencyclidine-bound GluN1a-GluN2B NMDA receptors [multiple data sets in TIFF format] | Chou THC, Furukawa HF [Pubmed: 35637422] [DOI: 10.1038/s41594-022-00772-0] |
1.6 TB | 4.3 Å |
| 2024-02-13 |  |
Plant SBF-SEM - Tobacco Leaf Chloroplast [130 micrographs in TIFF format] | Wickramanayake JS, Czymmek KJ [Pubmed: 37451777] [DOI: 10.1016/bs.mcb.2023.04.008] |
544.4 MB | — |
| 2021-11-16 |  |
Poly-alanine backbone model of E. coli BcsA bound to BcsB [multiple data sets in TIFF format] | Acheson JF, Ho R, Goularte NF, Cegelski L, Zimmer J [Pubmed: 33712813] [DOI: 10.1038/s41594-021-00569-7] |
3.2 TB | 3.4 - 4.2 Å |
| 2019-10-14 |  |
PolyA polymerase module of the cleavage and polyadenylation factor (CPF) from Saccharomyces cerevisiae [multiple data sets in MRCS format] | Casanal A, Kumar A, Hill CH, Emsley P, Passmore LA [Pubmed: 29074584] [DOI: 10.1126/science.aao6535] |
15.4 TB | 3.55 Å |
| 2023-09-14 |  |
Porcine uroplakin complex [multiple data sets in TIFF format] | Oda T, Yanagisawa H, Kikkawa M | 1.4 TB | 3.5 Å |
| 2013-10-30 |  |
Pre-fusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy [3755 micrographs in MRCS format] | Bartesaghi A, Merk A, Borgnia MJ, Milne JLS, Subramaniam S [Pubmed: 24154805] [DOI: 10.1038/nsmb.2711] |
117.8 GB | 6.0 Å |
| 2023-02-17 |  |
Principles of mitoribosomal small subunit assembly in eukaryotes [multiple data sets in TIFF format] | Harper NJ, Burnside C, Klinge S [Pubmed: 36482135] [DOI: 10.1038/s41586-022-05621-0] |
73.6 TB | 2.36 - 3.8 Å |
| 2019-10-07 |  |
Processed FIB SEM images of a parasitophorous vacuole containing Toxoplasma gondii ∆CAP parasites, complemented with CAP. [1 multi-frame micrographs composed of 1 frames each in MRC format] | Hunt A, Russell MRG, Wagener J, Kent R, Carmeille R, Peddie CJ, Collinson L, Heaslip A, Ward GE, Treeck M [Pubmed: 31577230] [DOI: 10.7554/elife.50598] |
583.8 MB | — |
| 2019-10-07 |  |
Processed FIB SEM images of a parasitophorous vacuole containing Toxoplasma gondii ∆CAP parasites. [1 multi-frame micrographs composed of 1 frames each in MRC format] | Hunt A, Russell MRG, Wagener J, Kent R, Carmeille R, Peddie CJ, Collinson L, Heaslip A, Ward GE, Treeck M [Pubmed: 31577230] [DOI: 10.7554/elife.50598] |
898.1 MB | — |
| 2022-06-22 |  |
Processed FIB-SEM images of murine hypothalamus-derived GT1-7 neuronal cells [multiple data sets in TIFF format] | Peddie CJ, Collinson LM [DOI: 10.3389/fcell.2022.819571] |
140.5 GB | — |
| 2022-01-10 |  |
Proton-powered peptide transporter SbmA in lipid nanodisc [7306 multi-frame micrographs composed of 40 frames each in TIFF format] | Ghilarov D, Inaba-Inoue S, Stepien P, Qu F, Michalczyk E, Pakosz Z, Nomura N, Ogasawara S, Walker GC, Rebuffat S, Iwata S, Heddle JG, Beis K [Pubmed: 34516884] [DOI: 10.1126/sciadv.abj5363] |
2.7 TB | 3.9 Å |
| 2021-11-02 |  |
Proton-powered peptide transporter SbmA in lipid nanodisc complexed with Fab S11-1 (SbmA-FabS11-1-MccB17) [7286 multi-frame micrographs composed of 40 frames each in TIFF format] | Ghilarov D, Inaba-Inoue S, Stepien P, Qu F, Michalczyk E, Pakosz Z, Nomura N, Ogasawara S, Walker GC, Rebuffat S, Iwata S, Heddle JG, Beis K [Pubmed: 34516884] [DOI: 10.1126/sciadv.abj5363] |
2.5 TB | 3.59 Å |
| 2022-07-01 |  |
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2 [8056 multi-frame micrographs composed of 31 frames each in TIFF format] | Basu RS, Sherman MB, Gagnon MG [Pubmed: 35697706] [DOI: 10.1038/s41467-022-31129-2] |
1.7 TB | 2.6 - 3.6 Å |
| 2023-05-12 |  |
Purified human apoferritin tilt series, TomoBEAR benchmark [2089 multi-frame micrographs composed of 10 frames each in TIFF format] | Balyschew N, Yushkevich A, Mikirtumov V, Sanchez RM, Sprink T, Kudryashev M [DOI: 10.1101/2023.01.10.523437] |
159.1 GB | 2.8 Å |
| 2023-07-18 |  |
Purified tails from bacteriophage T5 [3208 multi-frame micrographs composed of 40 frames each in MRC format] | Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C [Pubmed: 36961893] [DOI: 10.1126/sciadv.ade9674] |
7.5 TB | 3.45 - 4.22 Å |
| 2024-02-01 |  |
Purified tails from bacteriophage T5 after interaction with E. coli receptor FhuA inserted into nanodiscs - dataset 2 [5733 multi-frame micrographs composed of 40 frames each in MRC format] | Linares R, Arnaud C, Effantin G, Darnault C, Epalle NH, Erba EB, Schoehn G, Breyton C [Pubmed: 36961893] [DOI: 10.1126/sciadv.ade9674] |
917.9 GB | 3.45 - 4.32 Å |
| 2023-05-12 |  |
Quantification of gallium cryo-FIB milling damage in biological lamella [multiple data sets in MRC format] | Lucas BA, Grigorieff N [Pubmed: 37216561] [DOI: 10.1073/pnas.2301852120] |
8.1 GB | — |
| 2023-10-09 |  |
Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network [multiple data sets in TIFF format] | Lee RG, Rudler DL, Raven SA, Peng L, Chopin A, Moh ESX, McCubbin T, Siira SJ, Fagan SV, DeBono NJ, Stentenbach M, Browne J, Rackham FF, Li J, Simpson KJ, Marcellin E, Packer NH, Reid GE, Padman BS, Rackham O, Filipovska A | 434.2 GB | — |
| 2024-01-16 |  |
REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis [multiple data sets in DM4 and TIFF formats] | Belevich I, Jokitalo E [Pubmed: 30995177] [DOI: 10.1091/mbc.e18-11-0698] |
8.7 GB | — |
