Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 6.3 min after anaphase onset [3206 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
83.2 GB | — |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 3.9 min after anaphase onset [2293 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
26.8 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 4.3 min after anaphase onset [1358 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
14.0 GB | — |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 5.3 min after anaphase onset [1998 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
31.2 GB | — |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 5.7 min after anaphase onset [2620 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
63.0 GB | — |
| 2024-01-23 |  |
SpCas9 bound to 6 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.5 TB | 3.87 Å |
| 2023-12-11 |  |
SpCas9 bound to 12 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.1 TB | 3.64 Å |
| 2023-12-11 |  |
SpCas9 bound to 14 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
2.1 TB | 3.49 Å |
| 2023-12-11 |  |
SpCas9 bound to 16 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.3 TB | 3.12 Å |
| 2023-12-11 |  |
SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å |
| 2024-02-06 |  |
SpCas9 bound to 18 nucleotide complementary DNA substrate in the checkpoint state [multiple data sets in EER format] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
7.7 TB | 2.54 Å |
| 2023-12-11 |  |
SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å |
| 2023-12-11 |  |
SpCas9 bound to 8 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.4 TB | 4.14 Å |
| 2023-05-11 |  |
Cryo electron tomography dataset of purified human TREX-mRNPs [multiple data sets in TIFF and MRC formats] | Pacheco-Fiallos B, Vorländer MK, Plaschka C [Pubmed: 37020021] [DOI: 10.1038/s41586-023-05904-0] |
1.1 TB | — |
| 2024-03-26 |  |
Single particle movie data of NAIP5/Flic complex [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Paidimuddala B, Cao J, Zhang L [Pubmed: 38055825] [DOI: 10.1126/sciadv.adi8539] |
3.1 TB | 2.93 Å |
| 2022-01-18 |  |
Single-particle cryoEM data of yeast Ubr1-Ubc2-Ub-N-degron complex (initiation) [10932 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
5.7 TB | 3.35 Å |
| 2022-06-07 |  |
Single-particle cryoEM data of yeast Ubr1-Ubc2-Ub-Ub-N-degron complex (elongation) [5413 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
2.9 TB | 3.67 Å |
| 2022-01-25 |  |
Single-particle cryoEM data of yeast Ubr1-Ub-N-degron complex (pre-elongation) [4101 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
1.9 TB | 6.04 Å |
| 2022-01-18 |  |
Single-particle cryoEM data of yeast Ubr1 (apo) [5912 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
3.2 TB | 7.69 Å |
| 2022-09-09 |  |
Tiltseries of Coxiella burnetii [35 tilt series in MRC format] | Park D, Steiner S, Shao M, Roy CR, Liu J [Pubmed: 36190257] [DOI: 10.1128/iai.00410-22] |
1.1 TB | 11.0 Å |
| 2021-11-09 |  |
Structure of human GABA(B) receptor in an inactive state [3435 multi-frame micrographs composed of 60 frames each in MRC format] | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR [Pubmed: 32581365] [DOI: 10.1038/s41586-020-2452-0] |
854.1 GB | 3.3 Å |
| 2022-05-17 |  |
Structures of positive allosteric modulator-bound and unbound active human calcium-sensing receptor [13082 multi-frame micrographs composed of 60 frames each in TIFF format] | Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR [Pubmed: 34916296] [DOI: 10.1073/pnas.2115849118] |
3.8 TB | 2.7 Å |
| 2022-03-08 |  |
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor [15464 multi-frame micrographs composed of 50 frames each in TIFF format] | Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR [Pubmed: 34916296] [DOI: 10.1073/pnas.2115849118] |
4.0 TB | 5.9 Å |
| 2022-09-09 |  |
Human NTCP in complex with YN69083 Fab [multiple data sets in TIFF format] | Park JH, Iwamoto M, Yun JH, Uchikubo-Kamo T, Son D, Jin Z, Yoshida H, Ohki M, Ishimoto N, Mizutani K, Oshima M, Muramatsu M, Wakita T, Shirouzu M, Liu K, Uemura T, Nomura N, Iwata S, Watashi K, Tame JRH, Nishizawa T, Lee W, Park SY [Pubmed: 35580630] [DOI: 10.1038/s41586-022-04857-0] |
5.5 TB | 3.3 Å |
| 2021-04-14 |  |
Cryo electron tomography of the reconstituted TRIM72-proteoliposomes on both positive and negative curvatures. [multiple data sets in MRC format] | Park SH, Song HK | 6.2 GB | — |
