Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-08-25 |  |
Materials for step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo [5 reconstructed volumes in MRC format] | Scaramuzza S, Castaño-Díez D [Pubmed: 34437529] [DOI: 10.1371/journal.pbio.3001318] |
645.2 GB | — |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
| 2021-05-16 |  |
Human WLS in complex with WNT8A [7849 multi-frame micrographs composed of 50 frames each in TIFF format] | Nygaard R, Jia Y, Kim J, Ross D, Parisi G, Clarke O.B., Virshup D.M., Mancia F. [Pubmed: 33357447] [DOI: 10.1016/j.cell.2020.11.038] |
1.9 TB | 3.19 Å |
| 2021-05-25 |  |
Structural basis of ω-3 fatty acid transport across the blood-brain barrier [15516 multi-frame micrographs composed of 50 frames each in TIFF format] | Cater RJ, Chua GL, Erramilli SK, Keener JE, Choy BC, Tokarz P, Chin CF, Quek DQY, Kloss B, Pepe JG, Parisi G, Wong BH, Clarke OB, Marty MT, Kossiakoff AA, Khelashvilli G, Silver DL, Mancia F [Pubmed: 34135507] [DOI: 10.1038/s41586-021-03650-9] |
3.9 TB | 3.03 Å |
| 2021-05-07 |  |
Cryo-EM structures of human RNA Polymerase III [multiple data sets in TIFF and MRCS formats] | Girbig M, Misiaszek AD, Vorlaender MK, Mueller CW [Pubmed: 33558764] [DOI: 10.1038/s41594-020-00555-5] |
3.3 TB | 2.8 - 3.4 Å |
| 2022-01-24 |  |
Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan [multiple data sets in TIFF and MRC formats] | van der Stel AX, Gordon ER, Sengupta A, Martínez AK, Klepacki D, Perry TN, Herrero Del Valle A, Vázquez-Laslop N, Sachs MS, Cruz-Vera LR, Innis CA [Pubmed: 34504068] [DOI: 10.1038/s41467-021-25663-8] |
3.7 TB | 2.4 - 2.9 Å |
| 2021-04-14 |  |
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell (tilt series) [1 tilt series in MRC format] | Cuellar LK, Schaffer M, Martinez-Sanchez A, Plitzko JM, Foerster F, Engel BD [Pubmed: 28938114] [DOI: 10.1016/j.cell.2017.08.008] |
5.8 GB | — |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.5 GB | — |
| 2021-09-24 |  |
Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot 1 [1364 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
634.3 GB | 3.38 - 8.07 Å |
| 2021-09-24 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract (lot1) [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.3 TB | 3.5 - 5.5 Å |
| 2021-04-14 |  |
Cryo electron tomography of the reconstituted TRIM72-proteoliposomes on both positive and negative curvatures. [multiple data sets in MRC format] | Park SH, Song HK | 6.2 GB | — |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 and pentavalent OD [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.9 GB | — |
| 2022-11-28 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing WT PopZ [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
7.1 GB | — |
| 2021-05-10 |  |
Yeast C, Ci, C*, and P complex spliceosomes [multiple data sets in TIFF and MRCS formats] | Wilkinson ME, Fica SM, Galej WP, Nagai K [Pubmed: 27459055] [DOI: 10.1038/nature19316] |
8.9 TB | 2.8 - 10.0 Å |
| 2021-08-20 |  |
Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.4 GB | — |
| 2021-08-27 |  |
Cryo-electron tomography of JCVI-Syn3A (large cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.5 GB | — |
| 2021-05-03 |  |
Affinity-purified VgaL in complex with 70S ribosomes from Listeria monocytogenes [1834 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 34117249] [DOI: 10.1038/s41467-021-23753-1] |
146.0 GB | 2.9 Å |
| 2021-05-07 |  |
Affinity-purified VgaA-LC in complex with 70S ribosomes from Staphylococcus aureus [3348 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 34117249] [DOI: 10.1038/s41467-021-23753-1] |
241.0 GB | 3.1 Å |
| 2021-05-03 |  |
Affinity-purified LsaA in complex with 70S ribosomes from Enterococcus faecalis [420 multi-frame micrographs composed of 40 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 34117249] [DOI: 10.1038/s41467-021-23753-1] |
82.3 GB | 2.9 Å |
| 2022-03-14 |  |
Movies of a photosynthetic reaction centre - double light-harvesting 1 complex from the bacterium G. phototrophica [19815 multi-frame micrographs composed of 20 frames each in MRCS format] | Qian P, Gardiner AT, Šímová I, Naydenova K, Croll TI, Jackson PJ, Nupur N, Kloz M, Čubáková P, Kuzma M, Zeng Y, Castro-Hartmann P, van Knippenberg B, Goldie KN, Kaftan D, Hrouzek P, Hájek J, Agirre J, Siebert CA, Bína D, Sader K, Stahlberg H, Sobotka R, Russo CJ, Polívka T, Hunter CN, Koblížek M [Pubmed: 35171663] [DOI: 10.1126/sciadv.abk3139] |
6.6 TB | 2.35 - 2.5 Å |
| 2021-07-30 |  |
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity [8120 multi-frame micrographs composed of 80 frames each in TIFF format] | Gupta TK, Klumpe S, Gries K, Strauss M, Rudack T, Schuller JM, Schroda M, Engel BD [Pubmed: 34166613] [DOI: 10.1016/j.cell.2021.05.011] |
2.0 TB | 3.8 Å |
| 2021-06-18 |  |
Subtomograms of nucleosomes extracted from cryo-tomograms of Drosophila melanogaster embryos [1 subtomograms in EM format] | Harastani M, Eltsov M, Leforestier A, Jonic S [Pubmed: 34095222] [DOI: 10.3389/fmolb.2021.663121] |
666.3 MB | — |
| 2023-06-23 |  |
Heterogeneous non-canonical nucleosomes predominate in yeast cells in situ [multiple data sets in TIFF and MRC formats] | Tan ZY, Cai S, Noble AJ, Chen JK, Shi J, Gan L [DOI: 10.7554/eLife.87672.1] |
711.4 GB | 24.0 Å |
| 2021-04-14 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4 [2484 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R, Yanagisawa H, Kikkawa M [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
688.8 GB | 1.35 Å |
