Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2014-02-21 |  |
Low-contrast particle stack for HIV-1 Env gp160 precursor (MRC stack) [stack of 124478 particles in MRC format] | Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG [Pubmed: 23757493] [DOI: 10.1073/pnas.1307382110] |
38.0 GB | 6.0 Å |
| 2014-02-21 |  |
Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format] | Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG [Pubmed: 23757493] [DOI: 10.1073/pnas.1307382110] |
164.2 GB | 6.0 Å |
| 2021-09-01 |  |
Lysosomes as Fiducials for SXT and SIM Correlation [166 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 162.4 MB | — |
| 2014-09-17 |  |
MAVS CARD and DeltaProTM filaments [multiple data sets in TIFF, MRC and IMAGIC formats] | Xu H, He X, Zheng H, Huang L, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX [Pubmed: 24569476] [DOI: 10.7554/eLife.01489] |
35.3 GB | 9.6 - 16.4 Å |
| 2023-08-25 |  |
MCRV virus [4271 multi-frame micrographs composed of 16 frames each in MRCS format] | Zhang Q, Jiang W [Pubmed: 37083840] [DOI: 10.1371/journal.ppat.1011341] |
4.2 TB | 3.1 - 3.7 Å |
| 2022-03-14 |  |
Marburgvirus nucleoprotein RNA complex [2469 multi-frame micrographs composed of 80 frames each in TIFF format] | Fujita-Fujiharu Y, Sugita Y, Takamatsu Y, Houri K, Igarashi M, Muramoto Y, Nakano M, Tsunoda Y, Taniguchi I, Becker S, Noda T [Pubmed: 35246537] [DOI: 10.1038/s41467-022-28802-x] |
3.3 TB | 3.1 Å |
| 2021-08-25 |  |
Materials for step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo [5 reconstructed volumes in MRC format] | Scaramuzza S, Castaño-Díez D [Pubmed: 34437529] [DOI: 10.1371/journal.pbio.3001318] |
645.2 GB | — |
| 2020-08-18 |  |
Mechanism of Ribosome Rescue by Alternative Release Factor B [multiple data sets in MRC format] | Chan K-H, Petrychenko V, Mueller C, Maracci C, Holtkamp W, Wilson DN, Fischer N, Rodnina MV [Pubmed: 32796827] [DOI: 10.1038/s41467-020-17853-7] |
788.2 GB | 2.6 - 3.7 Å |
| 2022-11-14 |  |
Memantine-bound GluN1a-GluN2B NMDA receptors [3657 multi-frame micrographs composed of 30 frames each in TIFF format] | Chou THC, Furukawa FH [Pubmed: 35637422] [DOI: 10.1038/s41594-022-00772-0] |
721.7 GB | 3.96 Å |
| 2021-04-06 |  |
Metavinculin ABD-F-actin complex [1818 multi-frame micrographs composed of 40 frames each in TIFF format] | Mei L, Alushin GM [Pubmed: 32969337] [DOI: 10.7554/eLife.62514] |
593.0 GB | 2.9 Å |
| 2021-04-14 |  |
Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats] | Tun W, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome M, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL | 75.3 GB | — |
| 2021-04-14 |  |
Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats] | Tun WM, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome Y, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL | 50.5 GB | — |
| 2023-02-14 |  |
Microbacterium phage Oxtober96 [10437 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
2.7 TB | 2.2 Å |
| 2020-11-27 |  |
Micrograph frames from 110 internal SEMC/NYSBC test datasets used for Topaz-Denoise model generation & analysis [1000000 micrographs in MRCS format] | Bepler T, Kelley K, Noble AJ, Berger B [Pubmed: 33060581] [DOI: 10.1038/s41467-020-18952-1] |
33.9 TB | 2.9 - 12.54 Å |
| 2020-03-23 |  |
Micrographs of DPS collected at 100 keV using a hybrid pixel direct electron detector [739 multi-frame micrographs composed of 32 frames each in MRCS format] | Naydenova K, McMullan G, Peet MJ, Lee Y, Edwards PC, Chen S, Leahy E, Scotcher S, Henderson R, Russo CJ [Pubmed: 31709064] [DOI: 10.1107/S2052252519012612] |
23.3 GB | 3.4 Å |
| 2020-03-23 |  |
Micrographs of E. coli 70S ribosomes collected at 100 keV using a hybrid pixel direct electron detector [127 multi-frame micrographs composed of 32 frames each in MRCS format] | Naydenova K, McMullan G, Peet MJ, Lee Y, Edwards PC, Chen S, Leahy E, Scotcher S, Henderson R, Russo CJ [Pubmed: 31709064] [DOI: 10.1107/S2052252519012612] |
4.0 GB | 7.0 Å |
| 2023-11-06 |  |
Micrographs of ER-derived vesicles from HEK293F cells [893 multi-frame micrographs composed of 8 frames each in TIFF format] | Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Gröllers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Förster F [Pubmed: 36697828] [DOI: 10.1038/s41586-022-05638-5] |
1.1 TB | 4.5 - 9.3 Å |
| 2022-07-27 |  |
Micrographs of IAPP (amylin) amyloid fibrils [1330 micrographs in MRC format] | Röder C, Schröder GF [Pubmed: 32541895] [DOI: 10.1038/s41594-020-0442-4] |
83.1 GB | 4.2 - 8.1 Å |
| 2022-07-26 |  |
Micrographs of PI3-kinase SH3 amyloid fibrils [multiple data sets in MRC format] | Röder C, Schröder GF [Pubmed: 31434882] [DOI: 10.1038/s41467-019-11320-8] |
32.0 GB | 3.4 Å |
| 2022-11-21 |  |
Micrographs of Rigid-Rod Aromatics BP-NBD [5610 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.2 TB | 2.4 Å |
| 2022-11-18 |  |
Micrographs of Rigid-Rod Aromatics pBP-NBD [8261 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] |
1.7 TB | 2.4 Å |
| 2022-12-06 |  |
Micrographs of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter [multiple data sets in TIFF format] | Schulte T, Chaves-Sanjuan A, Ricagno S [Pubmed: 36396658] [DOI: 10.1038/s41467-022-34743-2] |
2.0 TB | 3.3 Å |
| 2023-05-10 |  |
Micrographs of the IL-27 quaternary receptor signaling complex [22541 multi-frame micrographs composed of 50 frames each in TIFF format] | Caveney NA, Glassman CR, Jude KM, Tsutsumi N, Garcia KC [Pubmed: 35579417] [DOI: 10.7554/eLife.78463] |
8.5 TB | 3.47 Å |
| 2022-02-28 |  |
Micrographs of the NaCT-Citrate complex [multiple data sets in TIFF format] | Sauer DB, Song J, Wang B, Hilton JK, Karpowich NK, Mindell JA, Rice WJ, Wang DN [Pubmed: 33597751] [DOI: 10.1038/s41586-021-03230-x] |
2.4 TB | 3.04 Å |
| 2022-06-01 |  |
Micrographs of viruses ATV and AFV6 [791 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang F, Cvirkaite-Krupovic V, Krupovic M, Egelman EH [Pubmed: 35325592] [DOI: 10.1016/j.cell.2022.02.019] |
218.0 GB | 3.9 Å |
