EMPIAR-10007 - Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format]

EMPIAR-10007

Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format]

Publication:

Molecular architecture of the uncleaved HIV-1 envelope glycoprotein trimer.

Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG

Pnas 110 (2013) 12438-12443

PMID: 23757493

DOI: doi:10.1073/pnas.1307382110

Related EMDB entry:

EMD-5447

Deposited:

2014-02-20

Released:

2014-02-21

Last modified:

2014-02-21

Imageset size:

164.22 GB

Imageset DOI:

10.6019/EMPIAR-10007

Experimental metadata:

Download xml json

Version history:

2015-10-27

REL

Restructured the entry directory to have "data" and ".private".

Contains:

picked particles - multiframe - unprocessed

Image Sets

1. U115 raw particle images

Category:

picked particles - multiframe - unprocessed

Image format:

SPIDER

No. of images or tilt series:

670023

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.74688, 0.74688)

Details:

All raw particle images in the *.dat SPIDER stack files were only inverted in contrast without any further processing such as filtering or binning. Defocus information is provided in the sel_group.dat files.

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Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

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