EMPIAR-10007 - Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format]

EMPIAR-10007

Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format]

Publication:

Molecular architecture of the uncleaved HIV-1 envelope glycoprotein trimer.

Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG

Pnas 110 (2013) 12438-12443

PMID: 23757493

DOI: doi:10.1073/pnas.1307382110

Related EMDB entry:

EMD-5447

Deposited:

2014-02-20

Released:

2014-02-21

Last modified:

2014-02-21

Imageset size:

164.22 GB

Imageset DOI:

10.6019/EMPIAR-10007

Experimental metadata:

Download xml json

Version history:

2015-10-27

REL

Restructured the entry directory to have "data" and ".private".

Contains:

picked particles - multiframe - unprocessed

Image Sets

1. U115 raw particle images

Category:

picked particles - multiframe - unprocessed

Image format:

SPIDER

No. of images or tilt series:

670023

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.74688, 0.74688)

Details:

All raw particle images in the *.dat SPIDER stack files were only inverted in contrast without any further processing such as filtering or binning. Defocus information is provided in the sel_group.dat files.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-17]

324件のPDBエントリーが新たに公開されました。（2026-06-17付）