Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-10-26 |  |
CryoEM structure of the outer membrane secretin channel pIV from the f1 filamentous bacteriophage [multiple data sets in TIFF format] | Conners R, Gold VAM [Pubmed: 34728631] [DOI: 10.1038/s41467-021-26610-3] |
7.0 TB | 2.7 Å |
| 2021-11-01 |  |
electron cryo-tomograms of axons from human cerebral organoids, expressing membrane-targeted GFP [multiple data sets in MRC and MRCS formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
181.4 GB | — |
| 2021-11-01 |  |
electron cryo-tomograms of axons from human cerebral organoids, expressing L1CAM-GFP [multiple data sets in MRC and TIFF formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
30.5 GB | — |
| 2021-11-01 |  |
electron cryo-tomograms of axons from human cerebral organoids, expressing GFP-ESYT1 [multiple data sets in MRC and TIFF formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
40.9 GB | — |
| 2021-11-16 |  |
Cryo-electron microscopy reconstruction of ATP-bound human P-glycoprotein [5986 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim Y, Chen J [Pubmed: 29371429] [DOI: 10.1126/science.aar7389] |
2.0 TB | 3.4 Å |
| 2021-11-16 |  |
Cryo-electron microscopy reconstruction of apo bovine MRP1 [2226 multi-frame micrographs composed of 50 frames each in TIFF format] | Johnson ZL, Chen J [Pubmed: 28238471] [DOI: 10.1016/j.cell.2017.01.041] |
804.5 GB | 3.49 Å |
| 2021-10-18 |  |
Drug-free A. baumannii MsbA [6113 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
268.4 GB | 5.2 Å |
| 2021-11-30 |  |
E. coli MsbA in DDM in complex with G247 [3485 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
307.0 GB | 3.55 Å |
| 2021-10-18 |  |
E. coli MsbA in nanodiscs in complex with G247 [multiple data sets in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
442.5 GB | 3.9 Å |
| 2021-10-25 |  |
Cryo-EM micrographs of human ABCA1 [9819 multi-frame micrographs composed of 32 frames each in MRC format] | Qian H, Zhao X, Cao P, Lei J, Yan N, Gong X [Pubmed: 28602350] [DOI: 10.1016/j.cell.2017.05.020] |
16.3 TB | 4.1 Å |
| 2021-10-25 |  |
Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens [7651 multi-frame micrographs composed of 27 frames each in TIFF format] | Gu Y, Srikanth V, Salazar-Morales AI, Jain R, O'Brien JP, Yi SM, Soni RK, Samatey FA, Yalcin SE, Malvankar NS [Pubmed: 34471289] [DOI: 10.1038/s41586-021-03857-w] |
1.5 TB | 3.8 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [multiple data sets in TIFF format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
256.7 GB | 4.2 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [1128 multi-frame micrographs composed of 64 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31748546] [DOI: 10.1038/s41467-019-13247-6] |
1.6 TB | 3.7 Å |
| 2021-09-17 |  |
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0 [4080 micrographs in MRC format] | Godoy AS | 359.3 GB | 2.48 Å |
| 2021-09-28 |  |
Cryo-electron microscopy of the liposome-embedded type 1 ryanodine receptor [11187 multi-frame micrographs composed of 50 frames each in TIFF format] | Melville ZM, Kim K, Clarke OB, Marks AR [Pubmed: 34469755] [DOI: 10.1016/j.str.2021.08.001] |
2.4 TB | 3.36 - 3.98 Å |
| 2021-11-10 |  |
Structural mechanism of GTPase-powered ribosome-tRNA movement [multiple data sets in MRC and MRCS formats] | Petrychenko V, Peng B-Z, Schwarzer AP, Peske F, Rodnina MV, Fischer N [Pubmed: 34635670] [DOI: 10.1038/s41467-021-26133-x] |
987.5 GB | 2.35 - 9.5 Å |
| 2022-01-14 |  |
High resolution 3D imaging of liver subcellular architecture and its link to metabolic function [multiple data sets in TIFF format] | Parlakgul G, Hotamisligil GS [Pubmed: 35264794] [DOI: 10.1038/s41586-022-04488-5] |
2.1 TB | — |
| 2022-01-18 |  |
High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells [multiple data sets in TIFF and MRC formats] | von Kugelgen A, Bharat TAM [Pubmed: 34800371] [DOI: 10.1016/j.str.2021.10.012] |
304.4 GB | 4.37 Å |
| 2021-11-08 |  |
Monitoring reversion of hepatitis C virus-induced cellular alterations by Direct-Acting Antivirals using cryo Soft X-ray Tomography and Infrared Microscopy [7 reconstructed volumes in TIFF format] | Perez-Berna AJ, Benseny-Cases N, Rodríguez MJ, Valcarcel R, Carrascosa JL, Gastaminzab P, Pereiroa E [Pubmed: 34726165] [DOI: 10.1107/S2059798321009955] |
260.2 MB | — |
| 2022-10-07 |  |
Tilt series of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein [6 tilt series in MRC format] | Marcink TC, Porotto M, des Georges A, Moscona A [Pubmed: 35984891] [DOI: 10.1126/sciadv.abo3153] |
9.6 GB | — |
| 2021-09-10 |  |
cryo electron tomography of Apoferritin [6 tilt series in TIFF format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
17.3 GB | 2.86 Å |
| 2022-07-26 |  |
Cryo electron microscopy final particle stacks of Substance P-Neurokinin Receptor G protein complexes [multiple data sets in MRCS format] | Harris JA, Faust B [Pubmed: 34711980] [DOI: 10.1038/s41589-021-00890-8] |
170.8 GB | 3.0 - 3.2 Å |
| 2023-05-22 |  |
Venous puncture wound thrombi, 1, 5, 20 min post-puncture, 100 nm XY raw images, 20 nm XY pixels every 20 micons, 3 nm wide area TEM montages at selected depth [15 multi-frame micrographs composed of 1 frames each in DM4 format] | Storrie B, Leapman RD [Pubmed: 34531522] [DOI: 10.1038/s42003-021-02615-y] |
381.2 GB | — |
| 2021-10-19 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 5720 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
1.9 GB | — |
| 2021-11-09 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 54488 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
25.0 GB | 10.5 Å |
