Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-07-25 | Structure of Stl2, the transcriptional repressor of S. aureus Pathogenicity Island 2 [6233 micrographs in EER format] | Qiao CCQ, Debiasi-Anders GDA, Mir-Sanchis IMS [Pubmed: 39987160] [DOI: 10.1038/s41467-025-57156-3] |
2.9 TB | 3.69 Å | |
| 2025-07-25 | Cryo-EM of RNAP post-terminal complexes on negatively supercoiled DNA [multiple data sets in TIFF format] | Brewer JJ, Inlow K, Mooney RA, Bosch B, Olinares PDB, Marcelino LP, Chait BT, Landick R, Gelles J, Campbell EA, Darst SA [Pubmed: 39779919] [DOI: 10.1038/s41594-024-01447-8] |
1.3 TB | 4.69 Å | |
| 2025-07-25 | Demo apoferritin data for Magellon [multiple data sets in MRC and TIFF formats] | Stagg SM | 117.2 GB | 2.7 Å | |
| 2025-07-25 | Legobody dimer [1964 multi-frame micrographs composed of 50 frames each in MRC format] | Pacesa M, Van Hall-Beauvais A, Marchand A, Georgeon S, Correia BE | 1.4 TB | 3.2 Å | |
| 2025-07-25 | Uncharacterized Q8U0N8 protein from Pyrococcus furiosus [6465 multi-frame micrographs composed of 50 frames each in EER format] | Schweke H, Pacesa M, Levin T, Goverde CA, Kumar P, Duhoo Y, Dornfeld LJ, Dubreuil B, Georgeon S, Ovchinnikov S, Woolfson DN, Correia BE, Dey S, Levy ED [Pubmed: 38325366] [DOI: 10.1016/j.cell.2024.01.022] |
4.5 TB | 2.79 Å | |
| 2025-07-25 | Cysteine tRNA ligase homodimer [multiple data sets in MRC and EER formats] | Schweke H, Pacesa M, Levin T, Goverde CA, Kumar P, Duhoo Y, Dornfeld LJ, Dubreuil B, Georgeon S, Ovchinnikov S, Woolfson DN, Correia BE, Dey S, Levy ED [Pubmed: 38325366] [DOI: 10.1016/j.cell.2024.01.022] |
12.8 TB | 2.8 Å | |
| 2025-07-25 | Raw .tiff images of Panx1 containing c-terminal activating domain stack 1 [3318 multi-frame micrographs composed of 50 frames each in TIFF format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
2.1 TB | 3.0 Å | |
| 2025-07-25 | Raw .tiff images of Panx1 containing c-terminal activating domain stack 2 [3340 multi-frame micrographs composed of 50 frames each in TIFF format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
1.8 TB | 3.0 Å | |
| 2025-07-25 | Raw .tiff images of Panx1 lacking c-terminal activating domain stack 2 [4400 multi-frame micrographs composed of 50 frames each in TIFF format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
2.4 TB | 2.9 Å | |
| 2025-07-25 | Motion corrected .mrc images of Panx1 containing c-terminal activating domain stack 1 [3895 micrographs in MRC format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
1.3 TB | 3.0 Å | |
| 2025-07-25 | Motion corrected .mrc images of Panx1 lacking c-terminal activating domain stack 2 [4999 micrographs in MRC format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
1.7 TB | 2.9 Å | |
| 2025-07-25 | Motion corrected micrographs for CULLIN3-KLHL22-RBX1 complex [16178 micrographs in MRC format] | Su M.-Y. [Pubmed: 37788672] [DOI: 10.1016/j.str.2023.09.002] |
1.4 TB | 2.59 - 3.67 Å | |
| 2025-07-25 | Cryo-EM structure of GPR119-Gs-Nb35 complex with small molecule agonist MBX-2982 [508 multi-frame micrographs composed of 2030 frames each in EER format] | Kim D, Liu W, Viner R, Cherezov V [Pubmed: 39471802] [DOI: 10.1016/j.str.2024.10.004] |
490.5 GB | 3.51 Å | |
| 2025-07-25 | Cryo-EM structure of GPR119-Gs-Nb35 complex with endogenous lipid oleoylethanolamide (OEA) [604 multi-frame micrographs composed of 1680 frames each in EER format] | Kim D, Liu W, Viner R, Cherezov V [Pubmed: 39471802] [DOI: 10.1016/j.str.2024.10.004] |
442.9 GB | 3.66 Å | |
| 2025-07-25 | BSEP E297G Structure in GDN [12223 multi-frame micrographs composed of 36 frames each in TIFF format] | Reddy BG, Gruget C, Moore JM [Pubmed: 40195555] [DOI: 10.1038/s42003-025-07908-0] |
1.7 TB | 3.23 Å | |
| 2025-07-25 | BSEP Apo Structure in GDN [17482 multi-frame micrographs composed of 33 frames each in TIFF format] | Reddy BG, Gruget C, Moore JM [Pubmed: 40195555] [DOI: 10.1038/s42003-025-07908-0] |
1.4 TB | 2.8 Å | |
| 2025-07-25 | Intermediate states of ATAD5-RFC incubated with PCNA for 3min [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 38871854] [DOI: 10.1038/s41594-024-01332-4] |
10.6 TB | 3.1 - 4.2 Å | |
| 2025-07-25 | Computationally Designed Nanocage O43_129 [922 multi-frame micrographs composed of 99 frames each in TIFF format] | Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D [Pubmed: 38480887] [DOI: 10.1038/s41586-024-07188-4] |
381.5 GB | 6.77 Å | |
| 2025-07-25 | Computationally Designed Nanocage O43_129_+8 [2991 multi-frame micrographs composed of 99 frames each in TIFF format] | Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D [Pubmed: 38480887] [DOI: 10.1038/s41586-024-07188-4] |
1.2 TB | 12.98 Å | |
| 2025-07-25 | Single particle cryo-EM aligned micrographs of bacterial 30S ribosome in complex with transcribing RNA polymerase [25906 micrographs in MRC format] | Rahil H, Weixlbaumer A [Pubmed: 39607923] [DOI: 10.1126/science.ado8476] EMD-51616 EMD-51602 EMD-51603 EMD-51604 EMD-51623 EMD-51596 EMD-51597 EMD-51598 EMD-51599 EMD-51600 EMD-51622 EMD-51591 EMD-51592 EMD-51593 EMD-51594 EMD-51595 EMD-51618 EMD-51584 EMD-51585 EMD-51586 EMD-51601 EMD-51617 EMD-51619 EMD-51580 EMD-51581 EMD-51582 EMD-51583 EMD-51620 EMD-51576 EMD-51577 EMD-51578 EMD-51579 EMD-51615 EMD-51572 EMD-51573 EMD-51574 EMD-51575 EMD-51621 EMD-51587 EMD-51588 EMD-51589 EMD-51590 |
2.2 TB | 2.5 - 4.2 Å | |
| 2025-07-25 | Cryo-electron tomography on synaptic vesicles isolated from mouse brain (part 1) [multiple data sets in TIFF and MRC formats] | Kravcenko U, Ruwolt M, Kroll J, Yushkevich A, Zenkner M, Ruta J, Lotfy R, Wanker EE, Rosenmund C, Liu F, Kudryashev M [Pubmed: 39602275] [DOI: 10.1073/pnas.2407375121] |
1.4 TB | 15.6 - 101.5 Å | |
| 2025-07-25 | Cryo EM movies of Deinococcus radiodurans BamA [4223 multi-frame micrographs composed of 32 frames each in TIFF format] | Hongwu Qian HW [DOI: 10.52396/JUSTC-2024-0012] |
1.9 TB | 3.8 Å | |
| 2025-07-25 | Turnip Crinkle Virus: virus-like particles (TCV-P38+1) [multiple data sets in TIFF format] | Saunders K, Shah S, Peyret H, Meshcheriakova Y, Richardson J, Eltschkner S, Lawson DM, Lomonossoff G | 918.5 GB | 3.13 Å | |
| 2025-07-25 | Rat GluN1-GluN2B NMDA receptor channel in complex with glycine [multiple data sets in TIFF format] | Chou THC, Furukawa FH [Pubmed: 39085540] [DOI: 10.1038/s41586-024-07742-0] |
1.2 TB | 3.69 Å | |
| 2025-07-25 | NifLA complex from Azotobacter vinelandii [multiple data sets in TIFF and MRC formats] | Bueno Batista M, Richardson J, Webster MW, Ghilarov D, Peters JW, Lawson DM, Dixon R | 2.9 TB | 6.45 Å |