Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-10-09 |  |
Single particle cryo-EM dataset of the triskelion hub subparticle extraction from clathrin cages [multiple data sets in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
88.4 GB | 4.69 - 7.79 Å |
| 2019-10-14 |  |
PolyA polymerase module of the cleavage and polyadenylation factor (CPF) from Saccharomyces cerevisiae [multiple data sets in MRCS format] | Casanal A, Kumar A, Hill CH, Emsley P, Passmore LA [Pubmed: 29074584] [DOI: 10.1126/science.aao6535] |
15.4 TB | 3.55 Å |
| 2019-10-17 |  |
Cryo electron microscopy of TssA protein from T6SS of Vibrio cholerae. [multiple data sets in MRC and MRCS formats] | Nazarov S, Adaixo R, Basler M [Pubmed: 31403721] [DOI: 10.15252/embj.2018100825] |
1.3 TB | 3.9 Å |
| 2019-10-30 |  |
Cryo-EM structure of the translocator of the outer mitochondrial membrane [2057 multi-frame micrographs composed of 49 frames each in TIFF format] | Araiso Y, Tsutsumi A, Qiu J, Imai K, Shiota T, Song J, Lindau C, Wenz LS, Sakaue H, Yunoki K, Kawano S, Suzuki J, Wischnewski M, Schutze C, Ariyama H, Ando T, Becker T, Lithgow T, Wiedemann N, Pfanner N, Kikkawa M, Endo T [Pubmed: 31600774] [DOI: 10.1038/s41586-019-1680-7] |
1.9 TB | 3.81 Å |
| 2019-11-06 |  |
Cryo-EM dataset, containing multiple conformations of a heterodimeric ABC exporter TmrAB (EQ-mutant), incubated with a mixture of ATP and ADP [multiple data sets in MRC and MRCS formats] | Januliene D, Hofmann S, Mehdipour AR, Thomas C, Hummer G, Tampé R, Moeller A [Pubmed: 31316210] [DOI: 10.1038/s41586-019-1391-0] |
7.1 TB | 2.8 - 2.9 Å |
| 2019-11-07 |  |
Cryo-EM structure of calcium-bound TMEM16F in nanodisc with supplement of PIP2 [stack of 3823 particles in MRCS format] | Feng S, Jan LY, Cheng Y [Pubmed: 31291589] [DOI: 10.1016/j.celrep.2019.06.023] |
576.6 GB | 3.2 - 3.3 Å |
| 2019-11-11 |  |
Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. [10989 multi-frame micrographs composed of 33 frames each in TIFF format] | Suga M, Ozawa S, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y [Pubmed: 31182847] [DOI: 10.1038/s41477-019-0438-4] |
8.0 TB | 2.8 - 2.9 Å |
| 2019-11-15 |  |
Cryo-EM structure of the adenosine A2A receptor coupled to an engineered heterotrimeric G protein [multiple data sets in TIFF and MRCS formats] | Garcia-Nafria J, Lee Y, Bai X, Carpenter B, Tate CG [Pubmed: 29726815] [DOI: 10.7554/eLife.35946] |
1.1 TB | 4.11 Å |
| 2019-11-18 |  |
cryo-ET of cryo-FIB milled yeast cell in which scs2/22 ist2 are deleted [multiple data sets in MRC format] | Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W [Pubmed: 31743663] [DOI: 10.1016/j.devcel.2019.09.019] |
12.8 GB | — |
| 2019-11-18 |  |
cryo-ET of cryo-FIB milled yeast cell in which scs2/22 ist2 are deleted with high intracellular calcium [121 tilt series in MRC format] | Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W [Pubmed: 31743663] [DOI: 10.1016/j.devcel.2019.09.019] |
14.3 GB | — |
| 2019-11-18 |  |
cryo-ET of cryo-FIB milled yeast cell, in which Tcb3-GFP is overexpressed and scs2/22 ist2 tcb1/2 are deleted [117 tilt series in MRC format] | Hoffmann PC, Bharat TAM, Wozny MR, Boulanger J, Miller EA, Kukulski W [Pubmed: 31743663] [DOI: 10.1016/j.devcel.2019.09.019] |
3.1 GB | — |
| 2019-11-19 |  |
Cryo-electron microscopy structure of the P-Rex1–G-beta-gamma signaling scaffold [multiple data sets in TIFF, MRC and MRCS formats] | Cash JN, Urata S, Li S, Ravala SK, Avramova LV, Shost MD, Gutkind JS, Tesmer JJG, Cianfrocco MA [Pubmed: 31663027] [DOI: 10.1126/sciadv.aax8855] |
3.0 TB | 3.2 Å |
| 2019-12-04 |  |
Cryo-EM structure of multidrug efflux pump MexAB-OprM [8722 multi-frame micrographs composed of 32 frames each in MRC format] | Tsutsumi K, Yonehara R, Ishizaka-Ikeda E, Miyazaki N, Maeda S, Iwasaki K, Nakagawa A, Yamashita E [Pubmed: 30944318] [DOI: 10.1038/s41467-019-09463-9] |
3.5 TB | 3.64 - 3.76 Å |
| 2019-12-19 |  |
Structure of a synthetic beta-carboxysome shell [1343 multi-frame micrographs composed of 25 frames each in TIFF format] | Laughlin TG [Pubmed: 31501298] [DOI: 10.1104/pp.19.00885] |
423.5 GB | 2.6 - 4.1 Å |
| 2019-12-19 |  |
3.2 Å Single-Particle Cryo-EM Reconstruction of 49 kDa Membrane-Bound PfCRT Complexed with Fab [multiple data sets in MRCS and MRC formats] | Kim JK, Tan YZT, Wicht KJW, Erramilli SKE, Dhingra SKD, Okombo JO, Vendome JV, Hagenah LMH, Giacometti SIG, Warren ALW, Nosol KN, Roepe PDR, Potter CSP, Carragher BC, Kossiakoff AAK, Quick MQ, Fidock DAF, Mancia FM [Pubmed: 31776516] [DOI: 10.1038/s41586-019-1795-x] |
830.4 GB | 3.3 Å |
| 2019-12-20 |  |
Single Particle Cryo-EM Reconstructions of Human FACT in Complex with Partially Assembled Sub-nucleosomes [multiple data sets in TIFF, MRC and MRCS formats] | Liu YL, Zhou KZ, Zhang NZ, Wei HW, Tan YZT, Zhang ZZ, Carragher BC, Potter CSP, D'Arcy SD, Luger KL [Pubmed: 31775157] [DOI: 10.1038/s41586-019-1820-0] |
2.2 TB | 4.9 - 7.4 Å |
| 2019-12-20 |  |
Apo-state Streptavidin [multiple data sets in MRCS format] | Han Y, Fan X, Wang H, Zhao F, Tully CG, Kong J, Yao N, Yan N [Pubmed: 31879346] [DOI: 10.1073/pnas.1919114117] |
922.4 GB | 2.6 Å |
| 2020-01-31 |  |
CryoEM dataset containing multiple conformations of the asymmetric αVβ8 integrin bound to latent TGF-β on a holey carbon grid (strongly preferred orientations) [multiple data sets in TIFF, MRC and MRCS formats] | Campbell MG, Cheng Y [Pubmed: 31955848] [DOI: 10.1016/j.cell.2019.12.030] |
1.2 TB | 2.87 - 3.6 Å |
| 2020-01-31 |  |
CryoEM dataset containing multiple conformations of the asymmetric αVβ8 integrin bound to latent TGF-β on a graphene oxide grid (preferred orientations) [multiple data sets in TIFF, MRC and MRCS formats] | Campbell MG, Cheng Y [Pubmed: 31955848] [DOI: 10.1016/j.cell.2019.12.030] |
2.2 TB | 2.87 - 3.6 Å |
| 2020-01-31 |  |
CryoEM dataset containing multiple conformations of the asymmetric αVβ8 integrin bound to two Fabs on a holey carbon grid (minimal preferred orientations) [multiple data sets in TIFF, MRC and MRCS formats] | Campbell MG, Cheng Y [Pubmed: 31955848] [DOI: 10.1016/j.cell.2019.12.030] |
882.1 GB | 3.51 Å |
| 2020-02-07 |  |
FIB-SEM of parapodia from Platynereis dumerilii [multiple data sets in TIFF format] | Hennies J, Lleti JMS, Schieber NL, Templin RM, Steyer AM, Schwab Y [Pubmed: 32029771] [DOI: 10.1038/s41598-020-58736-7] |
84.9 GB | — |
| 2020-02-07 |  |
FIB-SEM of a HeLa cell [multiple data sets in TIFF format] | Hennies J, Lleti JMS, Schieber NL, Templin RM, Steyer AM, Schwab Y [Pubmed: 32029771] [DOI: 10.1038/s41598-020-58736-7] |
94.0 GB | — |
| 2020-02-07 |  |
Cryo-EM reconstructions of tau filaments in chronic traumatic encephalopathy [multiple data sets in MRCS and MRC formats] | Falcon B, Zivanov J, Zhang W, Murzin AG, Garringer HJ, Vidal R, Crowther RA, Newell KL, Ghetti B, Goedert M, Scheres SHW [Pubmed: 30894745] [DOI: 10.1038/s41586-019-1026-5] |
1.2 TB | 2.3 - 3.4 Å |
| 2020-02-18 |  |
Cryo-EM structure of an undocked innexin-6 hemichannel in phospholipids [933 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
49.5 GB | 3.8 Å |
| 2020-02-18 |  |
Cryo-EM structure of an undocked innexin-6 hemichannel in detergent [497 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
26.4 GB | 3.8 Å |
