The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-05-14 | β2-adrenergic receptor in complex with nucleotide-free G protein Gs [multiple data sets in TIFF format] | Papasergi-Scott MM, Eskici G, Seven AB, Skiniotis G [Pubmed: 38480881] [DOI: 10.1038/s41586-024-07153-1] |
1.4 TB | 3.2 - 4.2 Å | |
2024-05-14 | β2-adrenergic receptor in complex with GTP-bound G protein Gs, vitrified 5 seconds post-GTP addition [8700 multi-frame micrographs composed of 63 frames each in TIFF format] | Papasergi-Scott MM, Panova O, Gao Y, Skiniotis G [Pubmed: 38480881] [DOI: 10.1038/s41586-024-07153-1] EMD-40096 EMD-40097 EMD-40098 EMD-40099 EMD-40100 EMD-40101 EMD-40102 EMD-40103 EMD-40104 EMD-40105 EMD-40106 EMD-40107 EMD-40108 EMD-40109 EMD-40110 EMD-40111 EMD-40112 EMD-40113 EMD-40114 EMD-40115 EMD-29985 EMD-29986 EMD-29987 EMD-29988 EMD-29989 EMD-29990 EMD-29991 EMD-29992 EMD-29993 EMD-29994 EMD-29995 EMD-29996 EMD-29997 EMD-29998 EMD-29999 EMD-40000 EMD-40001 EMD-40002 EMD-40004 EMD-40005 EMD-40009 EMD-40010 EMD-40011 EMD-40012 EMD-40013 EMD-40014 EMD-40015 EMD-40016 EMD-40017 EMD-40018 EMD-40019 EMD-40020 EMD-40021 EMD-40022 EMD-40023 EMD-40024 EMD-40025 EMD-40026 EMD-40027 EMD-40028 EMD-40156 EMD-40157 EMD-40158 EMD-40159 EMD-40160 EMD-40161 EMD-40163 EMD-40164 EMD-40165 EMD-40166 EMD-40167 EMD-40168 EMD-40169 EMD-40170 EMD-40171 EMD-40172 EMD-40173 EMD-40174 EMD-40175 EMD-40176 EMD-42408 EMD-42409 EMD-42410 EMD-42411 EMD-42412 EMD-42413 EMD-42414 EMD-42415 EMD-42416 EMD-42417 EMD-42418 EMD-42419 EMD-42420 EMD-42421 EMD-42422 EMD-42423 EMD-42424 EMD-42425 EMD-42426 EMD-42427 |
4.5 TB | 2.9 - 4.1 Å | |
2021-11-01 | transcription-translation coupling complex (TEC27_NusA_NusG_CHAPSO) [1307 micrographs in MRC format] | Ebright RHE [Pubmed: 32820061] [DOI: 10.1126/science.abb5317] |
69.5 GB | 3.2 Å | |
2021-05-25 | structure of potato virus X, the prototype of the Alphaflexiviridae family [3024 multi-frame micrographs composed of 40 frames each in MRC format] | Grinzato A, Kandiah E, Zanotti G [Pubmed: 32203412] [DOI: 10.1038/s41589-020-0502-4] |
6.6 TB | 2.2 Å | |
2022-06-22 | single particle cryo-EM of red blood cell lysate (hemolysate, hemoglobin reduced, filtered by SEC) [6608 multi-frame micrographs composed of 20 frames each in TIFF format] | Verbeke EJ [Pubmed: 35858567] [DOI: 10.1016/j.celrep.2022.111103] |
1.0 TB | 3.4 Å | |
2020-10-09 | mouse cGAS with reconstituted nucleosome [5353 multi-frame micrographs composed of 40 frames each in MRC format] | Zhao B, Xu P [Pubmed: 32911481] [DOI: 10.1038/s41586-020-2749-z] |
767.6 GB | 2.98 Å | |
2020-10-09 | mouse cGAS with nucleosomes from 293T [2979 multi-frame micrographs composed of 40 frames each in MRC format] | Zhao B, Xu P, Rowlett CM, Jing T, Shinde O, Lei Y, West AP, Liu WR, Li P [Pubmed: 32911481] [DOI: 10.1038/s41586-020-2749-z] |
1.5 TB | 4.36 Å | |
2019-04-05 | mouse MDA5-dsRNA filaments [592 multi-frame micrographs composed of 27 frames each in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
499.5 GB | 4.02 - 4.16 Å | |
2021-04-14 | mouse MDA5-dsRNA filamemts in complex of 2mM ADP-AlF4 [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
195.3 GB | 4.06 Å | |
2019-04-05 | mouse MDA5-dsRNA Filaments in presence of 1mM AMPPNP [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
1.5 TB | 3.68 - 3.93 Å | |
2019-04-05 | mouse MDA5-dsRNA 2.5-mM AMPPNP Filamemt [471 multi-frame micrographs composed of 75 frames each in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
1.1 TB | 4.06 Å | |
2019-04-05 | mouse MDA5-dsRNA 10mM ATP Filamemt [2213 micrographs in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
138.9 GB | 3.87 Å | |
2023-03-30 | mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7989 multi-frame micrographs composed of 1092 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.4 TB | 2.92 - 3.3 Å | |
2023-03-27 | mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.2.12.1 Spike [8046 multi-frame micrographs composed of 945 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.0 TB | 2.89 - 3.03 Å | |
2023-03-13 | mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.1 Spike [20892 multi-frame micrographs composed of 1568 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
10.6 TB | 3.03 - 3.22 Å | |
2023-03-27 | mouse ACE2 receptor bound to SARS-CoV-2 variant Beta Spike [5671 multi-frame micrographs composed of 40 frames each in MRC format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
3.8 TB | 4.4 Å | |
2021-09-17 | human melatonin receptor MT1 - Gi1 complex [3487 multi-frame micrographs composed of 48 frames each in TIFF format] | Okamoto HH, Miyauchi H, Inoue A, Raimondi F, Tsujimoto H, Kusakizako T, Shihoya W, Yamashita K, Suno R, Nomura N, Kobayashi T, Iwata S, Nishizawa T, Nureki O [Pubmed: 34354246] [DOI: 10.1038/s41594-021-00634-1] |
878.0 GB | 3.3 Å | |
2023-03-30 | human ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7254 multi-frame micrographs composed of 1092 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.1 TB | 2.92 Å | |
2018-03-21 | human 26S proteasome bound to the chemotherapeutic Oprozomib [stack of 238631 particles in MRCS format] | Haselbach D, Schrader J, Lambrecht F, Henneberg F, Chari A, Stark H [Pubmed: 28541292] [DOI: 10.1038/ncomms15578] |
100.5 GB | 3.8 Å | |
2023-06-02 | f1-derived nanorods [25065 multi-frame micrographs composed of 40 frames each in TIFF format] | Conners R, McLaren MJ, Gold V [Pubmed: 37169795] [DOI: 10.1038/s41467-023-37915-w] |
9.9 TB | 2.58 - 2.97 Å | |
2021-11-01 | electron cryo-tomograms of axons from human cerebral organoids, expressing membrane-targeted GFP [multiple data sets in MRC and MRCS formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
181.4 GB | — | |
2021-11-01 | electron cryo-tomograms of axons from human cerebral organoids, expressing L1CAM-GFP [multiple data sets in MRC and TIFF formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
30.5 GB | — | |
2021-11-01 | electron cryo-tomograms of axons from human cerebral organoids, expressing GFP-ESYT1 [multiple data sets in MRC and TIFF formats] | Hoffmann P, Giandomenico S, Ganeva I, Wozny M, Sutcliffe M, Lancaster M, Kukulski W [Pubmed: 34698018] [DOI: 10.7554/eLife.70269] |
40.9 GB | — | |
2023-02-06 | dephosphorylated human ryanodine receptor type 2 RyR2 [10954 multi-frame micrographs composed of 50 frames each in TIFF format] | Miotto MC, Weninger G, Dridi H, Yuan Q, Liu Y, Wronska A, Melville Z, Sittenfeld L, Reiken S, Marks AR [Pubmed: 35857850] [DOI: 10.1126/sciadv.abo1272] |
2.4 TB | 2.83 - 3.59 Å | |
2021-12-23 | cryoEM structure of Gq-coupled MRGPRX4 with small molecule agonist MS47134 [4506 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
1.3 TB | 2.6 Å |