現在、ストレージの障害により、一部データセットがアクセスできないか不完全な状態(Marked: Incomplete dataset)になっています。
以下の順で復旧作業継続中ですが、優先リクエスト承ります(email、inquiry)
ご不便をおかけしますがご理解よろしくお願いします。
大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-07-23 | Single Particle cryo-EM dataset of the conventional 50S ribosomal subunit used as control for shaped pulses [7416 multi-frame micrographs composed of 45 frames each in TIFF format] | Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ [Pubmed: 39605560] [DOI: 10.1101/2024.11.21.624652] |
953.5 GB | 4.1 Å | |
| 2025-07-23 | Single Particle cryo-EM dataset of the conventional HIV-1 envelope protein [2614 multi-frame micrographs composed of 1251 frames each in EER format] | Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ [Pubmed: 39605560] [DOI: 10.1101/2024.11.21.624652] |
1.4 TB | 3.2 Å | |
| 2025-07-23 | Single Particle cryo-EM dataset of shaped pulse revitrified Hemagglutinin [10270 multi-frame micrographs composed of 1179 frames each in EER format] | Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ [Pubmed: 39605560] [DOI: 10.1101/2024.11.21.624652] |
3.1 TB | 3.0 Å | |
| 2025-07-23 | Cryo-EM structure of thiamine-bound human SLC19A3 in inward-open state [5308 multi-frame micrographs composed of 45 frames each in TIFF format] | Gabriel FG [Pubmed: 39358356] [DOI: 10.1038/s41467-024-52872-8] |
2.5 TB | 3.53 Å | |
| 2025-07-23 | Cryo electron microscopy structure of human TRPM4 in SMA nanodisc [7199 micrographs in MRC format] | Ekundayo BE, Ni D, Stahlberg H [Pubmed: 39828793] [DOI: 10.1038/s41467-025-56131-2] |
449.9 GB | 3.6 Å | |
| 2025-07-23 | Cryo electron microscopy structure of human TRPM4 in SMA nanodisc [10102 micrographs in MRC format] | Ekundayo BE, Ni D, Stahlberg H [Pubmed: 39828793] [DOI: 10.1038/s41467-025-56131-2] |
631.3 GB | 3.5 Å | |
| 2025-07-23 | GLIC in MSP1E3D1 nanodisc at pH 5.5 [6626 multi-frame micrographs composed of 39 frames each in TIFF format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
1.6 TB | 2.7 Å | |
| 2025-07-21 | Cryoelectron microscopy image of MreB R193C Escherichia coli cell [1 micrographs in MRC format] | Zietek M, Miguel A, Shi H, Khusainov I, Asmar A, Ram S, Wartel M, Sueki A, Schorb M, Goulian M, Collet J-F, Beck M, Huang KC, Typas A | 710.8 MB | — | |
| 2025-07-18 | The CryoEM structure of N49-P9.6-FR3 and PGT121 Fabs in complex with BG505 SOSIP.664 [multiple data sets in TIFF format] | Nguyen DN, Tolbert WD, Pazgier M [Pubmed: 40373766] [DOI: 10.1016/j.str.2025.04.016] |
702.0 GB | 4.02 Å | |
| 2025-07-16 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from tg-SwDI mouse mouse brain tissue containing amyloid-beta fibrils [25662 multi-frame micrographs composed of 700 frames each in EER format] | Zielinski M, Peralta Reyes FS, Gremer L, Schemmert S, Frieg B, Schäfer LU, Willuweit A, Donner L, Elvers M, Nilsson LNG, Syvänen S, Sehlin D, Ingelsson M, Willbold D, Schröder GF [Pubmed: 37973869] [DOI: 10.1038/s41593-023-01484-4] |
11.2 TB | 3.3 - 4.2 Å | |
| 2025-07-16 | A tomogram of a concave region on the nucleus of a neutrophil [57 multi-frame micrographs composed of 10 frames each in TIFF format] | Liu JQ, Li ZX, Guo Q, Du WJ, Yang J [Pubmed: 37983515] [DOI: 10.1073/pnas.2307389120] |
35.7 GB | — | |
| 2025-07-16 | Single-particle cryo electron microscopy of apo-Integrin a4b7 in the compact state [multiple data sets in TIFF, MRC and MRCS formats] | Hollis JA, Campbell MG [Pubmed: 40929264] [DOI: 10.1126/sciadv.adx9567] |
1.4 TB | 3.1 Å | |
| 2025-07-16 | CryoEM Structure of Bombus Flight Muscle Thick Filaments at 6Å Resolution [4476 micrographs in MRC format] | Li J, Rahmani H, Abbasi Yeganeh F, Rastegarpouyani H, Taylor DW, Wood NB, Previs MJ, Iwamoto H, Taylor KA [Pubmed: 36613818] [DOI: 10.3390/ijms24010377] |
4.1 TB | 6.0 Å | |
| 2025-07-16 | Full-length human cystathionine beta-synthase [2628 multi-frame micrographs composed of 1246 frames each in EER format] | McCorvie TJ, Basle A [Pubmed: 38575566] [DOI: 10.1038/s41467-024-46864-x] |
2.4 TB | 3.8 - 3.9 Å | |
| 2025-07-16 | Full-length human cystathionine beta-synthase with c-terminal his-tag [1740 multi-frame micrographs composed of 46 frames each in TIFF format] | McCorvie TJ, Basle A [Pubmed: 38575566] [DOI: 10.1038/s41467-024-46864-x] |
2.4 TB | 3.8 - 3.9 Å | |
| 2025-07-16 | Full-length human cystathionine beta-synthase with c-terminal his-tag in the presence of SAM [11220 multi-frame micrographs composed of 44 frames each in TIFF format] | McCorvie TJ, Basle A [Pubmed: 38575566] [DOI: 10.1038/s41467-024-46864-x] |
4.2 TB | 4.0 - 4.1 Å | |
| 2025-07-16 | Multi-frame cryo-EM images of a 69 kDa KRAS:G12C-2H11.4DS Fab complex [5013 multi-frame micrographs composed of 119 frames each in TIFF format] | Kung JE, Caleigh A [Pubmed: 38798381] [DOI: 10.1101/2024.05.10.593593] |
1.9 TB | 2.8 Å | |
| 2025-07-16 | Micrographs for mouse alpha synuclein [multiple data sets in MRC format] | Tatli M, Sokratian A, Zhou Y [Pubmed: 39485845] [DOI: 10.1126/sciadv.adq3539] |
467.9 GB | 2.9 - 3.1 Å | |
| 2025-07-14 | Multi-frame micrographs of a 74 kDa Ang2-5A12.6DS Fab complex in tiff format. [10063 multi-frame micrographs composed of 119 frames each in TIFF format] | Kung JE, Johnson MC [Pubmed: 38798381] [DOI: 10.1101/2024.05.10.593593] |
4.3 TB | 2.7 Å | |
| 2025-07-12 | Structural and functional insights into the enzymatic plasticity of the SARS-CoV-2 NiRAN domain [19338 multi-frame micrographs composed of 50 frames each in TIFF format] | Campbell EA, Small GI, Darst SA [Pubmed: 37890482] [DOI: 10.1016/j.molcel.2023.10.001] |
5.4 TB | 3.01 - 3.06 Å | |
| 2025-07-12 | Cryo-EM of SARS-CoV-2 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
20.1 TB | 4.7 Å | |
| 2025-07-12 | Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys [multiple data sets in TIFF and MRC formats] | Basu RS, Gagnon MG, Polikanov YS [Pubmed: 40536958] [DOI: 10.1126/science.ads9030] |
4.1 TB | 2.13 Å | |
| 2025-07-12 | Cryo-EM captures early intermediate steps in dynein activation by LIS1 [12792 multi-frame micrographs composed of 50 frames each in EER format] | Nguyen KHV, Karasmanis EP, Kendrick AA, Reck-Peterson SL, Leschziner AE | 10.9 TB | 2.7 - 6.2 Å | |
| 2025-07-10 | Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase with NADPH under turnover conditions [22290 multi-frame micrographs composed of 1036 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
9.4 TB | 2.2 Å | |
| 2025-07-10 | Cryo-EM of HCoV-229E 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
10.9 TB | 6.5 Å |