EMPIAR-11980 - Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format]

EMPIAR-11980

Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format]

Publication:

A 2.2 Å cryoEM structure of a quinol-dependent NO Reductase shows close similarity to respiratory oxidases

Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS

Nature communications 14 (2023)

PMID: 37296134

DOI: 10.1038/s41467-023-39140-x

Related EMDB entry:

EMD-16041

Deposited:

2023-07-04

Released:

2024-03-25

Last modified:

2024-03-25

Imageset size:

738.41 GB

Imageset DOI:

10.6019/EMPIAR-11980

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Cryo-EM movies of quinol-dependent nitric oxide reductase (qNOR) from Alcaligenes Xylosidans (Ax)

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

5466

Image size:

(4096, 4096)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.91, 0.91)

Details:

EER movies were collected on a Titan Krios fitted with a Falcon 4 camera and Selectris energy filter. EER movies were compressed to TIFF files with 43 frames each.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）