現在、ストレージの障害により、一部データセットがアクセスできないか不完全な状態(Marked: Incomplete dataset)になっています。
以下の順で復旧作業継続中ですが、優先リクエスト承ります(email、inquiry)
ご不便をおかけしますがご理解よろしくお願いします。
大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-09-04 | Structure of the C-terminal protease CtpA-LbcA complex of Pseudomonas aeruginosa [26257 multi-frame micrographs composed of 75 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38467832] [DOI: 10.1038/s44318-024-00069-6] |
15.1 TB | 3.55 - 4.14 Å | |
| 2025-09-04 | TadA with ADP [24810 multi-frame micrographs composed of 40 frames each in TIFF format] | Hohl M, Low HH [Pubmed: 39103374] [DOI: 10.1038/s41467-024-50280-6] |
3.9 TB | 3.1 Å | |
| 2025-09-04 | Cryo-ET of D. melanogaster Nup358::VN/Nup358::VC cells [multiple data sets in MRC format] | Sachweh J, Beck M [Pubmed: 40829587] [DOI: 10.1016/j.cell.2025.07.025] |
307.9 GB | 31.1 - 69.0 Å | |
| 2025-09-04 | Particle stacks from ANP amyloids from left atrial appendage of atrial fibrillation patient [multiple data sets in MRCS format] | Broggini L, Chaves-Sanjuan A, Ricagno S | 492.9 GB | 2.96 - 3.3 Å | |
| 2025-09-04 | Cryo electron micrographs of RyR2-S2808D with ARM210 [10990 multi-frame micrographs composed of 50 frames each in TIFF format] | Miotto MC [Pubmed: 39278969] [DOI: 10.1038/s41467-024-51791-y] |
2.4 TB | 3.18 Å | |
| 2025-09-04 | Cryo-electron microscopy of the bacterial phytochrome PaBphP in its PrPfr intermediate state [multiple data sets in TIFF and MRC formats] | Bodizs S, Westenhoff S [DOI: 10.1101/2025.08.21.671592] |
13.2 TB | 2.8 Å | |
| 2025-09-04 | Cryo electron micrographs of RyR2-R420Q with ARM210 [7807 multi-frame micrographs composed of 50 frames each in TIFF format] | Miotto MC [Pubmed: 39278969] [DOI: 10.1038/s41467-024-51791-y] |
1.7 TB | 3.53 Å | |
| 2025-09-03 | High-resolution snapshots of talin auto-inhibitory states [3636 multi-frame micrographs composed of 40 frames each in TIFF format] | Izard T, Rangarajan E.S. [Pubmed: 39468080] [DOI: 10.1038/s41467-024-52581-2] |
917.0 GB | 3.7 - 5.5 Å | |
| 2025-09-03 | Cryo-Electron Tomography of hippocampal neuron with Voltage imaging [193 reconstructed volumes in MRC format] | Jung MJ, Roh S-HR, Jung MJ, Roh S-HR, Jung MJ, Roh S-HR | 318.7 GB | 7.8 Å | |
| 2025-09-02 | Intermediate states of ATAD5-RFC incubated with PCNA for 20min [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 38871854] [DOI: 10.1038/s41594-024-01332-4] |
11.5 TB | 3.04 Å | |
| 2025-09-02 | In situ insights into antibody-neutralization of a pre-fusion Junin virus glycoprotein complex [41612 multi-frame micrographs composed of 40 frames each in TIFF format] | Rodriguez JAR, Taylor LJT [Pubmed: 40632652] [DOI: 10.1016/j.celrep.2025.115971] |
16.0 TB | 3.8 Å | |
| 2025-09-02 | In situ insights into antibody-neutralization of a pre-fusion Junin virus glycoprotein complex [39837 multi-frame micrographs composed of 40 frames each in TIFF format] | Rodriguez JAR, Taylor LJT [Pubmed: 40632652] [DOI: 10.1016/j.celrep.2025.115971] |
12.7 TB | 3.8 Å | |
| 2025-08-29 | Single particle cryoelectron microscopy of respiratory syncytial virus G ectodomain in complex with Fabs 2D10 and 3D3 [6605 multi-frame micrographs composed of 41 frames each in TIFF format] | O'Rourke S.M., Juarez M.G., Balasco Serrao V.H., DuBois R.M. [Pubmed: 40082629] [DOI: 10.1038/s41598-025-92886-w] |
7.2 TB | 7.29 Å | |
| 2025-08-29 | Benchmarking Talos Arctica with K3 and Biocontinuum energy filter [1483 multi-frame micrographs composed of 50 frames each in TIFF format] | Maruthi K, Morais M | 334.9 GB | 1.88 Å | |
| 2025-08-27 | In-situ high-resolution cryo-EM reconstructions from CEMOVIS [multiple data sets in EER and MRC formats] | Elferich J, Kaminek M, Kong L, Odriozola A, Kukulski W, Zuber B, Grigorieff N [Pubmed: 40553549] [DOI: 10.1107/S2052252525005196] |
573.0 GB | 3.5 Å | |
| 2025-08-22 | Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP [multiple data sets in TIFF format] | Azinas S, Wallden K, Katikaridis P, Jenne T, Schahl A, Mogk A, Carroni M [DOI: 10.1101/2025.06.06.658286] |
11.7 TB | 3.0 - 3.5 Å | |
| 2025-08-13 | Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase [18433 multi-frame micrographs composed of 875 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
6.9 TB | 2.29 Å | |
| 2025-08-13 | Cryo-EM images of alpha-synuclein fibrils «1B» capable of seeding GCI in vivo [multiple data sets in MRC and EER formats] | Burger D, Kashyrina M, Lewis A, De Nuccio F, Mohammed I, de La Seigliere H, van den Heuvel L, Feuillie C, Verchere J, Berbon M, Arotcarena M, Retailleau A, Bezard E, Laferriere F, Loquet A, Bousset L, Baron T, Lofrumento DD, De Giorgi F, Stahlberg H, Ichas F [DOI: 10.1101/2024.07.01.601498] |
8.8 TB | 1.93 Å | |
| 2025-08-13 | Cryo-EM structures of AceCas9 [multiple data sets in TIFF format] | Das A, Rai J, Roth MO, Shu Y, Medina ML, Barakat MR, Li H [Pubmed: 38348449] [DOI: 10.1038/s41929-023-01031-1] |
6.3 TB | 2.21 - 2.88 Å | |
| 2025-08-06 | Raw data used to generate the structure of coronin-7 bound to the Arp2/3 complex [7295 multi-frame micrographs composed of 40 frames each in TIFF format] | Fregoso FE, Boczkowska M, Rebowski G, Dominguez R, Barrie KR | 2.6 TB | — | |
| 2025-08-05 | Cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09 [multiple data sets in TIFF, MRC and MRCS formats] | Wang Y, Jia M, Tan W [DOI: 10.1016/j.soilbio.2025.109908] |
2.4 TB | — | |
| 2025-08-04 | Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils [multiple data sets in EER, MRC and MRCS formats] | van den Heuvel L, Burger D, Kashyrina M, de La Seigliere H, Lewis AJ, De Nuccio F, Mohammed I, Verchere J, Feuillie C, Berbon M, Arotcarena M., Retailleau A, Bezard E, Canron M, Meissner WG, Loquet A, Bousset L, Poujol C, Nilsson KPR, Laferriere F, Baron T, Lofrumento DD, De Giorgi F, Stahlberg H, Ichas F [DOI: 10.1101/2024.07.01.601498] |
18.1 GB | 3.8 Å | |
| 2025-08-01 | Dataset 3: 70S ribosome with 3 GE81112 bound (Complex 5) [19615 multi-frame micrographs composed of 40 frames each in TIFF format] | Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Çapuni R, Parry R, Zegarra R, Gil-Carton D, López-Alonso JP, Sanz KB, Brandi L, Gualerzi CO, Fucini P, Connell SR [DOI: 10.1101/2024.09.26.614503] |
3.7 TB | — | |
| 2025-08-01 | Dataset 2: Complex 2,3 and 4: 30S ribosome with IF1/2/3, tRNA, and GE81112 in complex preparation reaction [6172 multi-frame micrographs composed of 19 frames each in MRC format] | Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Çapuni R, Parry R, Zegarra R, Gil-Carton D, López-Alonso JP, Sanz KB, Brandi L, Gualerzi CO, Fucini P, Connell SR [DOI: 10.1101/2024.09.26.614503] |
2.3 TB | — | |
| 2025-08-01 | Dataset 1: Complex 1 - 30S ribosome with IF1/2/3, tRNA, and GE81112 [multiple data sets in MRCS format] | Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Çapuni R, Parry R, Zegarra R, Gil-Carton D, López-Alonso JP, Sanz KB, Brandi L, Gualerzi CO, Fucini P, Connell SR [DOI: 10.1101/2024.09.26.614503] |
515.2 GB | — |