Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-04-05 |  |
Rabbit muscle aldolase single particle cryoEM [multiple data sets in MRC format] | Bepler T, Morin A, Rapp M, Brasch J, Shapiro L, Noble AJ, Berger B [Pubmed: 31591578] [DOI: 10.1038/s41592-019-0575-8] |
1.4 TB | 3.7 - 3.92 Å |
| 2022-05-17 |  |
Conformational rearrangements upon start codon recognition in human 48S translation initiation complex [multiple data sets in MRC and MRCS formats] | Yi SH, Petrychenko V, Schliep JE, Goyal A, Linden A, Chari A, Urlaub H, Stark H, Rodnina MV, Adio S, Fischer N [Pubmed: 35489072] [DOI: 10.1093/nar/gkac283] |
1.1 TB | 3.7 - 4.7 Å |
| 2023-02-06 |  |
D-cycloserine and glutamate bound human GluN1a-GluN2C NMDA receptor [15350 multi-frame micrographs composed of 30 frames each in TIFF format] | Chou TH [Pubmed: 36309015] [DOI: 10.1016/j.molcel.2022.10.008] |
2.9 TB | 3.71 - 3.96 Å |
| 2024-04-17 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 2-51 in complex with prefusion SARS-CoV-2 spike glycoprotein [13880 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L [Pubmed: 33789084] [DOI: 10.1016/j.chom.2021.03.005] |
3.5 TB | 3.71 Å |
| 2020-12-04 |  |
NLRP1-CT filament [1994 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
534.7 GB | 3.72 Å |
| 2023-01-31 |  |
PYD-106 bound human GluN1a-GluN2C NMDA receptor in the presence of D-cycloserine and glutamate [11714 multi-frame micrographs composed of 30 frames each in TIFF format] | Chou TH [Pubmed: 36309015] [DOI: 10.1016/j.molcel.2022.10.008] |
2.1 TB | 3.72 - 4.19 Å |
| 2023-03-01 |  |
CryoEM structure of full-length dimeric ClbP [3888 multi-frame micrographs composed of 50 frames each in TIFF format] | Velilla JA, Walsh RM, Gaudet R [Pubmed: 36253550] [DOI: 10.1038/s41589-022-01142-z] |
1.1 TB | 3.73 Å |
| 2018-07-27 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 209816 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
115.4 GB | 3.73 - 4.27 Å |
| 2018-07-30 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 61929 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
34.0 GB | 3.73 - 4.27 Å |
| 2018-07-27 |  |
Single particle cryo-EM dataset of the flexible and variable oligomeric state complex AP-1:Arf1:tetherin-HIV-Nef [stack of 53841 particles in MRCS format] | Morris KL, Buffalo CZ, Hurley JH [Pubmed: 30053425] [DOI: 10.1016/j.cell.2018.07.004] |
10.1 GB | 3.73 - 4.27 Å |
| 2023-01-19 |  |
Cryo-EM structure of the RhlR-PqsE complex from Pseudomonas aeruginosa [multiple data sets in TIFF and MRCS formats] | Feathers JR, Fromme JC, Paczkowski JE [Pubmed: 36379213] [DOI: 10.1016/j.str.2022.10.008] |
2.0 TB | 3.74 - 4.1 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [13872 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
867.0 GB | 3.75 Å |
| 2021-10-26 |  |
CryoEM image reconstuction of the envelope protein of endogenous retrovirus Y032 from the human hookworm Ancylostoma ceylanicum [3027 multi-frame micrographs composed of 36 frames each in MRC format] | Mata CP, Merchant M, Modis Y [Pubmed: 35544562] [DOI: 10.1126/sciadv.abj6894] |
5.6 TB | 3.76 Å |
| 2023-08-20 |  |
The J-K RNA fragment of encephalomyocarditis virus IRES in complex with eIF4G-HEAT1 and eIF4A [6194 multi-frame micrographs composed of 40 frames each in TIFF format] | Suzuki H, Fujiyoshi Y | 1018.5 GB | 3.76 Å |
| 2022-09-09 |  |
Cryo-EM structure of the rigor state Jordan myosin-15-F-actin complex [2641 multi-frame micrographs composed of 24 frames each in TIFF format] | Gong R, Bird JE, Alushin GM [Pubmed: 35857845] [DOI: 10.1126/sciadv.abl4733] |
519.5 GB | 3.76 - 4.18 Å |
| 2018-04-23 |  |
Single particle cryoEM of hemagglutinin with spot-to-plunge time of 100ms [1100 micrographs in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
288.3 GB | 3.77 Å |
| 2021-09-22 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract lot2 [1456 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
696.5 GB | 3.77 - 4.32 Å |
| 2021-09-22 |  |
Closed linker DNA nucleosome reconstituted with GUB DNA [1320 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
624.4 GB | 3.77 Å |
| 2024-01-23 |  |
Cryo electron microscopy micrographs of high molecular weight fractions from yeast native cell extracts [multiple data sets in MRC format] | Schmidt L, Tueting C, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL [DOI: 10.1101/2022.07.15.498668] |
4.7 TB | 3.78 - 8.1 Å |
| 2019-10-07 |  |
Cryo-EM structure of the serotonin 5-HT1B receptor coupled to heterotrimeric Go [multiple data sets in TIFF and MRCS formats] | Garcia-Nafria J, Nehme R, Edwards PC, Tate CG [Pubmed: 29925951] [DOI: 10.1038/s41586-018-0241-9] |
8.0 TB | 3.78 Å |
| 2024-05-13 |  |
Cryo-EM structure of ERGIC-53 H34 deletion mutant in complex with MCFD2 [6175 multi-frame micrographs composed of 50 frames each in TIFF format] | Watanabe S, Inaba K [Pubmed: 38493152] [DOI: 10.1038/s41467-024-46747-1] |
1.3 TB | 3.78 Å |
| 2014-09-07 |  |
Full virus map of Brome Mosaic Virus (micrographs and particle coordinates) [multiple data sets in TIFF and MRC formats] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
1.7 TB | 3.8 Å |
| 2014-09-09 |  |
Full virus map of Brome Mosaic Virus (picked particles) [stack of 35142 particles in IMAGIC format] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
23.1 GB | 3.8 Å |
| 2022-11-21 |  |
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours [6406 multi-frame micrographs composed of 30 frames each in MRCS format] | Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS [Pubmed: 36114178] [DOI: 10.1038/s41467-022-32951-4] |
1.7 TB | 3.8 Å |
| 2022-05-27 |  |
Human Xkr8-Basigin complex bound to Fab fragment [1998 multi-frame micrographs composed of 48 frames each in TIFF format] | Sakuragi T, Tsutsumi A, Kikkawa M, Nagata S [Pubmed: 34625749] [DOI: 10.1038/s41594-021-00665-8] |
451.5 GB | 3.8 Å |
