Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with mutation +16 in intron 10 of MAPT [4805 multi-frame micrographs composed of 52 frames each in TIFF format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
911.2 GB | 3.4 Å |
| 2022-04-29 |  |
Raw data for "Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange" [1153 micrographs in MRC format] | Shibata S, Shoji M, Okada K, Matsunami H, Matthews M, Imada K, Nakayama K, Wolf M [Pubmed: 32284566] [DOI: 10.1038/s41564-020-0705-1] |
72.1 GB | 3.6 Å |
| 2020-11-18 |  |
Cryo-EM structure of mouse TRPV3 in a nanodisc [1818 multi-frame micrographs composed of 60 frames each in TIFF format] | Shimada H, Kusakizako T, Dung Nguyen TH, Nishizawa T, Hino T, Tominaga M, Nureki O [Pubmed: 32572254] [DOI: 10.1038/s41594-020-0439-z] |
2.1 TB | 3.3 Å |
| 2024-01-23 |  |
SPA cryo-EM micrographs of chicken FANCD2-FANCI3D with ds 44-bpDNA [14842 multi-frame micrographs composed of 40 frames each in TIFF format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
2.5 TB | 3.53 Å |
| 2024-01-23 |  |
SPA cryo-EM micrographs of chicken FANCD2-FANCI3D alone [1845 multi-frame micrographs composed of 80 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
2.0 TB | 4.1 Å |
| 2024-01-23 |  |
SPA cryo-EM micrographs of chicken ubiquitinated FANCD2-FANCI3D with ds 44-bpDNA [6515 multi-frame micrographs composed of 40 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
866.4 GB | 4.4 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFAB(Ser162-P, D307N)C in apo condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] |
2.5 TB | 3.4 - 3.7 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFABC WT (KdpB-Ser162-P) in presence of orthovanadate [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] |
399.3 GB | 3.3 - 7.4 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFAB(S162A)C under turnover condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] |
1.8 TB | 3.7 - 4.0 Å |
| 2022-11-18 |  |
Single particle cryo-EM of KdpFABC WT (KdpB-Ser162-P) under turnover condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] |
2.9 TB | 3.1 - 3.5 Å |
| 2021-04-14 |  |
DNA origami signposts for identifying proteins on cell membranes by electron cryotomography [2 tilt series in MRC format] | Silvester E, Vollmer B, Pražák V, Vasishtan D, Machala EA, Whittle C, Black S, Bath J, Turberfield AJ, Grünewald K, Baker LA [Pubmed: 33606980] [DOI: 10.1016/j.cell.2021.01.033] |
38.8 MB | 36.44 Å |
| 2020-07-27 |  |
Saccharomyces cerevisiae fatty acid synthase complex with bound gamma subunit [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
329.3 GB | 2.8 Å |
| 2020-07-27 |  |
Saccharomyces cerevisiae fatty acid synthase complex [multiple data sets in MRC and MRCS formats] | Singh K, Graf B, Stark H, Chari A [Pubmed: 32160528] [DOI: 10.1016/j.cell.2020.02.034] |
391.7 GB | 2.9 Å |
| 2024-04-12 |  |
Structural basis for directional rotation of the Salmonella flagellum [34381 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.1 TB | 3.4 - 6.7 Å |
| 2024-03-22 |  |
Structural basis for directional rotation of the Salmonella flagellum [39332 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.0 TB | 3.4 - 6.7 Å |
| 2021-10-11 |  |
Nucleolar maturation of the human small subunit processome [multiple data sets in TIFF and MRC formats] | Singh S, Vanden Broeck A, Klinge S [Pubmed: 34516797] [DOI: 10.1126/science.abj5338] EMD-23939 EMD-23936 EMD-24149 EMD-24150 EMD-24151 EMD-24152 EMD-24153 EMD-24154 EMD-24155 EMD-24156 EMD-24157 EMD-24158 EMD-24159 EMD-24160 EMD-24161 EMD-23940 EMD-23938 EMD-24162 EMD-24163 EMD-24164 EMD-24165 EMD-24166 EMD-24167 EMD-24168 EMD-24169 EMD-24170 EMD-24171 EMD-24172 EMD-24173 EMD-24174 EMD-24175 EMD-24176 |
74.6 TB | 2.6 - 6.37 Å |
| 2023-06-09 |  |
Cryo-EM SPA dataset of 2-oxoglutarate dehydrogenase complex from a Chaetomium thermophilum native cell extract [25991 multi-frame micrographs composed of 13 frames each in MRC format] | Skalidis I, Kyrilis FL, Tüting C, Träger TK, Hamdi F, Kastritis PL [Pubmed: 37217784] [DOI: 10.1038/s42003-023-04885-0] |
6.8 TB | 3.35 Å |
| 2022-05-11 |  |
Cryo-EM SPA dataset of Megadalton-range protein communities from a Chaetomium thermophilum native cell extract [2808 multi-frame micrographs composed of 13 frames each in MRC format] | Skalidis IS, Kyrilis FLK, Tüting CT, Müller JM, Sorokina MS, Hamdi FH, Sadian YS, Chojnowski GC, Kastritis PLK [Pubmed: 34836937] [DOI: 10.1038/s41467-021-27287-4] |
1.1 TB | 3.84 - 4.52 Å |
| 2021-09-01 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 4782 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
13.0 GB | 9.1 - 15.0 Å |
| 2021-11-09 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 54488 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
25.0 GB | 10.5 Å |
| 2021-10-19 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 5720 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
1.9 GB | — |
| 2021-09-10 |  |
Structural analysis of receptors and actin polarity in platelet protrusions [3 reconstructed volumes in EM format] | Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O [Pubmed: 34504018] [DOI: 10.1073/pnas.2105004118] |
6.0 GB | 26.6 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to the native O antigen [4604 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.2 TB | 3.2 Å |
| 2022-09-23 |  |
CryoEM structure of the nucleotide-free and open channel A.aeolicus WzmWzt transporter [3048 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
776.8 GB | 4.1 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to 3-O-methyl-D-mannose [3799 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.0 TB | 3.7 Å |
