Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-11-26 |  |
Cryo-EM reconstruction of heavy chain mouse apoferritin, 8 datasets testing dose rate and correlative double sampling mode for the Gatan K3 direct electron detector. [1143 multi-frame micrographs composed of 120 frames in LZW compressed TIFF format [multiple data sets in TIFF format] | Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA [Pubmed: 33984504] [DOI: 10.1016/j.jsb.2021.107745] |
8.5 TB | 1.655 Å |
| 2018-02-26 |  |
Cryo-EM reconstruction of a modified human Adenovirus C5 [231 multi-frame micrographs composed of 50 frames each in MRC format] | Schmid M, Ernst P, Honegger A, Suomalainen M, Zimmermann M, Braun L, Stauffer S, Thom C, Dreier B, Eibauer M, Kipar A, Vogel V, Greber UF, Medalia O, Plückthun A [Pubmed: 29386504] [DOI: 10.1038/s41467-017-02707-6] |
612.7 GB | 7.4 Å |
| 2022-11-18 |  |
Cryo-EM reconstruction of TNKS2 SAM-PARP filament [multiple data sets in MRCS, MRC and TIFF formats] | Mariotti L, Inian O, Desfosses A, Beuron F, Morris E.P, Guettler S [Pubmed: 36418402] [DOI: 10.1038/s41586-022-05449-8] |
11.8 TB | 2.98 Å |
| 2022-03-11 |  |
Cryo-EM reconstruction of TMEM106B fold I-d filaments from case 18 with multiple system atrophy [5697 multi-frame micrographs composed of 54 frames each in TIFF format] | Schweighauser M, Arseni D, Bacioglu M, Huang M, Lövestam S, Shi Y, Yang Y, Zhang W, Kotecha A, Garringer HJ, Vidal R, Hallinan GI, Newell KL, Tarutani A, Murayama S, Miyazaki M, Saito Y, Yoshida M, Hasegawa K, Lashley T, Revesz T, Kovacs GG, van Swieten J, Takao M, Hasegawa M, Ghetti B, Spillantini MG, Ryskeldi-Falcon B, Murzin AG, Goedert M, Scheres SHW [Pubmed: 35344985] [DOI: 10.1038/s41586-022-04650-z] |
1.0 TB | 3.64 Å |
| 2022-10-31 |  |
Cryo-EM reconstruction of P.falciparum kinesin-8B motor domain in no nucleotide state bound to tubulin dimer [4075 micrographs in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA [Pubmed: 36384964] [DOI: 10.1038/s41467-022-34710-x] |
216.2 GB | 3.3 - 4.3 Å |
| 2020-04-21 |  |
Cryo-EM reconstruction of CFA/I pili [2884 micrographs in SPIDER format] | Zheng W, Andersson M, Mortezaei N, Bullitt E, Egelman E [Pubmed: 31576215] [DOI: 10.1107/S2052252519007966] |
183.2 GB | 4.0 Å |
| 2023-01-10 |  |
Cryo-EM raw image of Bovine retinal pigmented epithelium lysate [multiple data sets in TIFF format] | Zhang Z., Morgan C.E. [Pubmed: 36577381] [DOI: 10.1016/j.celrep.2022.111876] |
1.8 TB | 2.28 - 3.32 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the ∆KsgA immature 30S sample [stack of 775859 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
422.2 GB | 3.3 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the small dataset of ∆KsgA 30S plus KsgA sample [stack of 588015 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
320.1 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the large dataset of ∆KsgA 30S plus KsgA sample [stack of 1821263 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
991.2 GB | 2.8 Å |
| 2023-10-18 |  |
Cryo-EM of the wild-type AtMSL10 in saposin [2120 multi-frame micrographs composed of 46 frames each in MRC format] [2120 multi-frame micrographs composed of 46 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
1.8 TB | 3.6 Å |
| 2023-10-18 |  |
Cryo-EM of the wild-type AtMSL10 in GDN [3828 multi-frame micrographs composed of 48 frames each in MRC format] [3828 multi-frame micrographs composed of 48 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
3.3 TB | 3.7 Å |
| 2022-03-14 |  |
Cryo-EM of the human insulin receptor ectodomain in complex with an insulin analog with truncated B chain and enlongated A chain [multiple data sets in MRC format] | Xiong X, Blakely A, Kim JH, Menting JG, Schäfer IB, Schubert HL, Agrawal R, Gutmann T, Delaine C, Zhang YW, Artik GO, Merriman A, Eckert D, Lawrence MC, Coskun Ü, Fisher SJ, Forbes BE, Safavi-Hemami H, Hill CP, Chou DH [Pubmed: 35289328] [DOI: 10.1038/s41589-022-00981-0] |
2.2 TB | 3.4 - 4.4 Å |
| 2022-07-26 |  |
Cryo-EM of recombinant Goslar chimallin [2889 multi-frame micrographs composed of 44 frames each in TIFF format] | Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Armbruster E, McCammon JA, Amaro RE, Pogliano J, Corbett KD, Villa E [Pubmed: 35922510] [DOI: 10.1038/s41586-022-05013-4] |
432.9 GB | 2.3 - 4.0 Å |
| 2022-07-26 |  |
Cryo-EM of recombinant 201phi2-1 chimallin [4058 multi-frame micrographs composed of 40 frames each in TIFF format] | Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Armbruster E, McCammon JA, Amaro RE, Pogliano J, Corbett KD, Villa E [Pubmed: 35922510] [DOI: 10.1038/s41586-022-05013-4] |
679.9 GB | 3.1 - 21.0 Å |
| 2024-03-21 |  |
Cryo-EM of human cannabinoid receptor 1 bound to Fenofibrate with MiniGsq and Nb35 complex [multiple data sets in TIFF format] | Tang W, Wang T, Li F, Wang J [Pubmed: 38298116] [DOI: 10.1002/advs.202306311] |
1.1 TB | 2.88 - 3.05 Å |
| 2024-04-07 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
10.8 TB | 7.8 Å |
| 2024-05-13 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL5c extended [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
1.0 TB | 9.1 Å |
| 2024-04-17 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL5b extended [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
14.8 TB | 7.4 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.8 TB | 7.8 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-1 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.2 TB | 7.1 Å |
| 2020-11-23 |  |
Cryo-EM of PAC1 receptor bound to PACAP38 and Gs protein [7649 multi-frame micrographs composed of 62 frames each in TIFF format] | Liang YL, Belousoff MJ, Zhao P, Koole C, Fletcher MM, Truong TT, Julita V, Christopoulos G, Xu HE, Zhang Y, Khoshouei M, Christopoulos A, Danev R, Sexton PM, Wootten D [Pubmed: 32004469] [DOI: 10.1016/j.molcel.2020.01.012] |
4.8 TB | 2.65 - 3.01 Å |
| 2021-03-05 |  |
Cryo-EM of Multiple System Atrophy seeded assembly of alpha-synuclein filaments [multiple data sets in TIFF and MRCS formats] | Lövestam S, Goedert M, Scheres S [Pubmed: 33548114] [DOI: 10.1002/2211-5463.13110] |
1.1 TB | 3.18 - 4.23 Å |
| 2022-02-25 |  |
Cryo-EM of Mechanosensitive Ion Channel Flycatcher1 in GDN [multiple data sets in MRC format] | Jojoa-Cruz S, Saotome K, Lee WH, Patapoutian A, Ward AB [Pubmed: 35165281] [DOI: 10.1038/s41467-022-28511-5] |
876.9 GB | 2.4 - 2.8 Å |
| 2024-04-17 |  |
Cryo-EM of MERS 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
16.7 TB | 6.4 - 6.9 Å |
