Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-10-03 |  |
Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging [multiple data sets in TIFF format] | Ezzedine J, Uwizeye C, Si Larbi G, Villain G, Louwagie M, Schilling M, Hagenmuller P, Gallet B, Stewart A, Petroutsos D, Devime F, Salze P, Liger L, Jouhet J, Dumont M, Ravanel S, Amato A, Valay JG, Jouneau PH, Falconet D, Marechal E [DOI: 10.21203/rs.3.rs-3038444/v1] |
104.7 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — |
| 2019-05-01 |  |
Retrieving High-Resolution Information from Disordered 2D Crystals by Single Particle Cryo-EM [multiple data sets in MRC and MRCS formats] | Righetto R, Biyani N, Kowal J, Chami M, Stahlberg H [Pubmed: 30979902] [DOI: 10.1038/s41467-019-09661-5] |
103.0 GB | 4.0 Å |
| 2023-10-06 |  |
Atypical flagella assembly and haploid genome coiling during male gamete formation in Plasmodium [multiple data sets in MRC format] | Hair M [DOI: 10.1101/2023.05.17.540968] |
100.7 GB | — |
| 2018-03-21 |  |
human 26S proteasome bound to the chemotherapeutic Oprozomib [stack of 238631 particles in MRCS format] | Haselbach D, Schrader J, Lambrecht F, Henneberg F, Chari A, Stark H [Pubmed: 28541292] [DOI: 10.1038/ncomms15578] |
100.5 GB | 3.8 Å |
| 2019-05-09 |  |
Cryo-EM structure of TRPV5 full length in nanodisc [stack of 930 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
100.1 GB | 3.0 Å |
| 2018-04-05 |  |
CryoET of apoferritin single particle with spot-to-plunge time of 400ms [multiple data sets in MRC and DYNAMO TBL AND OMD FILES formats] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
98.8 GB | — |
| 2023-10-10 |  |
EM ladder: four-species cryoEM protein mix for workflow and algorithm benchmarking: Apoferritin, beta-galactosidase, PP7 VLPs and TMV [1862 micrographs in MRC format] | Bobe D, Eng E, Kopylov M | 98.7 GB | 2.38 - 3.36 Å |
| 2021-03-24 |  |
Jack bean urease imaged at 79kX nominal magnification [100 multi-frame micrographs composed of 50 frames each in TIFF format] | Feathers JR, Spoth KA, Fromme JC [Pubmed: 33817625] [DOI: 10.1016/j.yjsbx.2021.100047] |
96.3 GB | 2.86 Å |
| 2023-10-03 |  |
Single particle cryo-EM dataset of mitochondrial complex I from Mus musculus inhibited by IACS-2858 - 2 [571 multi-frame micrographs composed of 25 frames each in MRC format] | Chung I, Hirst J [Pubmed: 33990335] [DOI: 10.1126/sciadv.abg4000] |
95.9 GB | 3.04 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of cowpea chlorotic mottle virus in plunge-frozen vitrified ice [272 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
95.6 GB | 4.98 Å |
| 2018-10-22 |  |
A multi-scale model of the yeast chromosome-segregation system [40 tilt series in MRC format] | Ng C, Deng L, Chen C, Lim H, Shi J, Surana U [Pubmed: 30504246] [DOI: 10.1083/jcb.201809088] |
95.4 GB | 32.0 Å |
| 2023-02-28 |  |
GroEL on EG-grid [531 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
95.2 GB | 1.99 Å |
| 2019-05-02 |  |
Cryo-EM structure of TRPV5 W583A in nanodisc [stack of 385896 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
94.4 GB | 2.8 Å |
| 2024-01-16 |  |
Cryo Electron tomography of germinated polar tubes from Vairimorpha necatrix [multiple data sets in MRC format] | Sharma H, Jespersen N, Ehrenbolger K, Carlson L.A., Barandun J [DOI: 10.1101/2023.05.31.543061] |
94.1 GB | 46.0 Å |
| 2022-03-21 |  |
CryoET of E. coli prepared with the Waffle Method [1504 multi-frame micrographs composed of 14 frames each in TIFF format] | Kelley K, Raczkowski AM, Klykov O, Jaroenlak P, Bobe D, Kopylov M, Eng ET, Bhabha G, Potter CS, Carragher B, Noble AJ [Pubmed: 35387991] [DOI: 10.1038/s41467-022-29501-3] |
94.0 GB | — |
| 2020-02-07 |  |
FIB-SEM of a HeLa cell [multiple data sets in TIFF format] | Hennies J, Lleti JMS, Schieber NL, Templin RM, Steyer AM, Schwab Y [Pubmed: 32029771] [DOI: 10.1038/s41598-020-58736-7] |
94.0 GB | — |
| 2016-06-07 |  |
Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc [multiple data sets in MRC format] | Gao Y [Pubmed: 27281200] [DOI: 10.1038/nature17964] |
93.8 GB | 2.95 Å |
| 2021-05-14 |  |
TSC complex particles [1767 micrographs in MRC format] | Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G [Pubmed: 33307091] [DOI: 10.1016/j.jmb.2020.166743] |
93.7 GB | 4.2 Å |
| 2016-03-16 |  |
Cryo-EM dataset of T20S proteasome [293 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
93.3 GB | 3.1 Å |
| 2023-03-27 |  |
Cryo electron microscopy of beta-2-microglobulin amyloid fibrils for the variant V27M (in vitro, pH 6.2) [611 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson M, Gallardo RU, Martinez RM, Guthertz N, So M, Aubrey LD, Radford SE, Ranson NA [Pubmed: 36864041] [DOI: 10.1038/s41467-023-36791-8] |
92.7 GB | 2.8 Å |
| 2016-11-10 |  |
Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å |
| 2020-03-04 |  |
Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy [1713 micrographs in MRC format] | Guerrero-Ferreira R, Taylor NM, Arteni AA, Kumari P, Mona D, Ringler P, Britschgi M, Lauer ME, Makky A, Verasdonck J, Riek R, Melki R, Meier BH, Böckmann A, Bousset L, Stahlberg H [Pubmed: 31815671] [DOI: 10.7554/eLife.48907] |
90.9 GB | 2.98 - 3.4 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: E.coli cryo-FIB lamellae multishot [30 tilt series in MRC format] | Khavnekar S, Erdmann PS, Plitzko JM [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] |
90.7 GB | 8.8 Å |
| 2022-03-14 |  |
SBF SEM of Human term placental villi [multiple data sets in TIFF format] | Lewis RM [DOI: 10.1101/2022.01.26.477815] |
90.2 GB | — |
