Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2017-06-28 |  |
Structure of an ion channel in nano disc [multiple data sets in MRC and MRCS formats] | Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y [Pubmed: 28658211] [DOI: 10.1038/nature22981] |
203.9 GB | 3.55 Å |
| 2018-01-17 |  |
Serial Block Face Scanning Electron Micrscopy dataset of fetal day 64 guinea pig psoas muscle in transverse [93 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
264.4 MB | — |
| 2017-08-23 |  |
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle [stack of 117471 particles in MRCS format] | Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y [Pubmed: 28689658] [DOI: 10.1016/j.molcel.2017.06.007] |
70.0 GB | 4.5 - 8.9 Å |
| 2018-07-18 |  |
Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome [multiple data sets in MRC and MRCS formats] | Zhu Y, Wang WL, Mao Y [Pubmed: 29636472] [DOI: 10.1038/s41467-018-03785-w] |
2.8 TB | 3.5 - 7.0 Å |
| 2017-05-24 |  |
Single Particle cryoEM Dataset of TcdA1 in prepore state (SPHIRE tutorial) [97 multi-frame micrographs composed of 24 frames each in MRCS format] | Gatsogiannis C, Roderer D, Raunser S [Pubmed: 28570515] [DOI: 10.3791/55448] |
72.8 GB | 3.5 Å |
| 2020-12-11 |  |
Single particle dataset of Nora virus [3516 multi-frame micrographs composed of 20 frames each in MRC format] | Laurinmäki P, Shakeel S, Ekstrom JO, Butcher SJ [Pubmed: 33184473] [DOI: 10.1038/s41598-020-76613-1] |
3.6 TB | 2.7 Å |
| 2017-03-15 |  |
Soft X-ray tomography of Plasmodium falciparum infected human erythrocytes stalled in egress by the inhibitors Compound 2 and E64 [1 Soft X-ray tomograms in MRC format] | Hale VL, Saibil HR, Duke E, Fleck RA, Blackman MJ [Pubmed: 28292906] [DOI: 10.1073/pnas.1619441114] |
280.6 MB | — |
| 2017-07-26 |  |
Cryo EM of Type VI Secretion System VipA-N3/VipB/Hcp complex [260 multi-frame micrographs composed of 30 frames each in TIFF format] | Wang J, Basler M [Pubmed: 28947741] [DOI: 10.1038/s41564-017-0020-7] |
26.2 GB | 3.7 Å |
| 2017-07-26 |  |
Cryo EM of Type VI Secretion System VipA-N2/VipB contracted sheath [186 multi-frame micrographs composed of 30 frames each in MRC format] | Wang J, Basler M [Pubmed: 28947741] [DOI: 10.1038/s41564-017-0020-7] |
74.0 GB | 4.0 Å |
| 2017-02-20 |  |
Cryo-EM structure of haemoglobin at 3.2 Å determined with the Volta phase plate [2261 multi-frame micrographs composed of 40 frames each in TIFF format] | Khoshouei M, Radjainia M, Baumeister W, Danev R [Pubmed: 28665412] [DOI: 10.1038/ncomms16099] |
237.1 GB | 3.2 Å |
| 2017-03-13 |  |
Bacteriophage P22 mature virion capsid protein [stack of 45150 particles in IMAGIC format] | Hryc CF, Chen D-H, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W [Pubmed: 28270620] [DOI: 10.1073/pnas.1621152114] |
159.4 GB | 3.3 Å |
| 2017-02-09 |  |
Structure of the human HCN1 hyperpolarization-activated cyclic nucleotide-gated ion channel [multiple data sets in MRC format] | Lee CH, MacKinnon R [Pubmed: 28086084] [DOI: 10.1016/j.cell.2016.12.023] |
66.5 GB | 3.5 Å |
| 2016-11-10 |  |
Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å |
| 2016-11-24 |  |
The pathway to GTPase activation of elongation factor SelB on the ribosome [multiple data sets in MRC format] | Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Rodnina MV, Stark H [Pubmed: 27842381] [DOI: 10.1038/nature20560] |
1.0 TB | 3.4 - 5.3 Å |
| 2016-12-02 |  |
CryoEM Dataset of L17-Depleted 50S Ribosomal Intermediates [stack of 131899 particles in MRC format] | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR [Pubmed: 27912064] [DOI: 10.1016/j.cell.2016.11.020] |
50.3 GB | 3.7 - 7.9 Å |
| 2016-09-21 |  |
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ [751 micrographs in MRC format] | Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ [Pubmed: 27561669] [DOI: 10.1038/ncomms12524] |
46.9 GB | 5.0 - 10.5 Å |
| 2016-09-22 |  |
Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Angstrom (particle images) [stack of 473827 particles in MRC format] | Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K [Pubmed: 26829225] [DOI: 10.1038/nature16940] |
75.2 GB | 3.7 Å |
| 2016-11-10 |  |
Structural basis for dynamic regulation of the human 26S proteasome [multiple data sets in SPIDER and MRC formats] | Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y [Pubmed: 27791164] [DOI: 10.1073/pnas.1614614113] |
2.0 TB | 3.8 - 8.0 Å |
| 2016-08-18 |  |
Structure and Dynamics of Single-isoform Recombinant Neuronal Human Tubulin [304 multi-frame micrographs composed of 23 frames each in MRC format] | Vemu A, Atherton J, Spector JO, Szyk A, Moores CA, Roll-Mecak A [Pubmed: 27129203] [DOI: 10.1074/jbc.C116.731133] |
487.7 GB | 4.0 Å |
| 2016-11-18 |  |
Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle [291 reconstructed volumes in MRC format] | Glancy B, Hartnell LM, Malide D, Yu ZX, Combs CA, Connelly PS, Subramaniam S, Balaban RS [Pubmed: 26223627] [DOI: 10.1038/nature14614] |
1.5 GB | — |
| 2016-07-06 |  |
Unsupervised single-particle deep classification via statistical manifold learning [multiple data sets in MRC format] | Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y | 28.2 GB | — |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [177 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
13.0 GB | 20.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [100 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
7.3 GB | 25.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [50 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
3.7 GB | 22.0 Å |
| 2016-06-20 |  |
Lambda excision HJ intermediate [stack of 66033 particles in MRC format] | Laxmikanthan G, Xu C, Brilot AF, Warren D, Steele L, Seah N, Tong W, Grigorieff N, Landy A, Van Duyne G [Pubmed: 27223329] [DOI: 10.7554/elife.14313] |
4.0 GB | 11.0 Å |
