Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-06-18 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 with beam-image shift of 7 um [3125 multi-frame micrographs composed of 59 frames each in TIFF format] | Efremov R, Stroobants A [Pubmed: 33950012] [DOI: 10.1107/S2059798321002151] |
695.6 GB | 1.7 Å |
| 2021-05-07 |  |
The cryo-EM structure of vesivirus 2117 highlights functional variations in entry pathways for viruses in different clades of the vesivirus genus. [2000 multi-frame micrographs composed of 50 frames each in MRC format] | Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D [Pubmed: 33853966] [DOI: 10.1128/JVI.00282-21] |
24.4 TB | 3.65 Å |
| 2021-04-06 |  |
Cryo-EM structure of the ternary Netrin 1-Neogenin 1-Repulsive Guidance Molecule B complex [1635 multi-frame micrographs composed of 40 frames each in TIFF format] | Robinson RA, Griffiths SC, van de Haar LL, Malinauskas T, van Battum EY, Zelina P, Schwab RA, Karia D, Malinauskaite L, Brignani S, van den Munkhof M, Dudukcu O, De Ruiter AA, Van den Heuvel DMA, Bishop B, Elegheert J, Aricescu AR, Pasterkamp RJ, Siebold C [Pubmed: 33740419] [DOI: 10.1016/j.cell.2021.02.045] |
1.2 TB | 5.98 Å |
| 2021-09-10 |  |
Structural analysis of receptors and actin polarity in platelet protrusions [3 reconstructed volumes in EM format] | Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O [Pubmed: 34504018] [DOI: 10.1073/pnas.2105004118] |
6.0 GB | 26.6 Å |
| 2021-02-19 |  |
Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector [7734 multi-frame micrographs composed of 40 frames each in MRC format] | Zhang K, Pintilie GD, Li S, Schmid MF, Chiu W [Pubmed: 33139928] [DOI: 10.1038/s41422-020-00432-2] |
3.7 TB | 1.36 Å |
| 2021-02-19 |  |
CryoEM structure of the LCD of hnRNPA2 amyloid-like fibrils [3937 multi-frame micrographs composed of 2 frames each in MRC format] | Lu J, Cao Q, Hughes MP, Sawaya MR, Boyer DR, Cascio D, Eisenberg DS [Pubmed: 32796831] [DOI: 10.1038/s41467-020-17905-y] |
1.2 TB | 3.1 Å |
| 2021-04-14 |  |
Cryo-electron tomography of the metazoan membrane-assembled retromer:SNX3 coat containing Wls cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
764.9 GB | 8.9 - 9.5 Å |
| 2021-03-03 |  |
Cryo electron microscopy of alpha-synuclein H50Q fibrils [3577 multi-frame micrographs composed of 30 frames each in MRC format] | Boyer DR, Li B, Sun C, Fan W, Sawaya MR, Jiang L, Eisenberg DS [Pubmed: 31695184] [DOI: 10.1038/s41594-019-0322-y] |
595.3 GB | 3.3 Å |
| 2021-07-09 |  |
Cryo-electron tomography of the fungal membrane-assembled retromer:Grd19 coat containing Kex2 cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
347.7 GB | 9.2 - 9.5 Å |
| 2021-11-23 |  |
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP [7176 multi-frame micrographs composed of 40 frames each in TIFF format] | Yu Q, Herrero Del Valle A, Singh R, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
1.2 TB | 2.8 Å |
| 2021-02-10 |  |
Cryo-EM structure of K+-bound hERG channel in the presence of astemizole [1865 multi-frame micrographs composed of 50 frames each in TIFF format] | Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T [Pubmed: 33450182] [DOI: 10.1016/j.str.2020.12.007] |
1.8 TB | 3.7 Å |
| 2021-02-10 |  |
Cryo-EM structure of K+-bound hERG channel [1496 multi-frame micrographs composed of 50 frames each in TIFF format] | Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T [Pubmed: 33450182] [DOI: 10.1016/j.str.2020.12.007] |
1.4 TB | 3.9 Å |
| 2021-11-16 |  |
Poly-alanine backbone model of E. coli BcsA bound to BcsB [multiple data sets in TIFF format] | Acheson JF, Ho R, Goularte NF, Cegelski L, Zimmer J [Pubmed: 33712813] [DOI: 10.1038/s41594-021-00569-7] |
3.2 TB | 3.4 - 4.2 Å |
| 2021-11-16 |  |
Cryo EM Structure of the E. coli BcsB Hexamer [multiple data sets in TIFF format] | Acheson JF, Ho R, Goularte NF, Cegelski L, Zimmer J [Pubmed: 33712813] [DOI: 10.1038/s41594-021-00569-7] |
837.2 GB | 3.4 Å |
| 2021-02-17 |  |
Raw cryo- and negative stain micrographs of a native extract from C. thermophilum used to reconstruct oxo acid dehydrogenase complexes [0 multi-frame micrographs composed of 0 frames each in MRC format] | Kastritis PLK [DOI: 10.1016/j.celrep.2021.108727] |
5.4 TB | 6.9 Å |
| 2021-02-12 |  |
Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
6.8 GB | — |
| 2021-02-12 |  |
cryo-EM single particle dataset of a DNA nanostructure called "The Pointer-v2" [2381 multi-frame micrographs composed of 62 frames each in MRCS format] | Kube M, Kohler F, Feigl E, Nagel-Yüksel B, Willner EM, Funke JJ, Gerling T, Stömmer P, Honemann MN, Martin TG, Scheres SHW, Dietz H [Pubmed: 33277481] [DOI: 10.1038/s41467-020-20020-7] |
9.0 TB | 7.4 Å |
| 2021-04-14 |  |
Nucleus as Fiducials for SXT and SIM Correlation [1 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 2.5 GB | — |
| 2021-09-01 |  |
Lysosomes as Fiducials for SXT and SIM Correlation [166 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 162.4 MB | — |
| 2021-03-05 |  |
Lipid Droplets as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 4.8 GB | — |
| 2021-03-05 |  |
Fluorescent NanoDiamonds as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 2.5 GB | — |
| 2021-03-05 |  |
Fluorescent Au as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 3.6 GB | — |
| 2021-03-05 |  |
Dynabeads as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 1.2 GB | — |
| 2021-01-29 |  |
Cryo-EM dataset of human pre-Bact spliceosome [multiple data sets in MRC format] | Townsend C, Leelaram MN, Agafonov DE, Dybkov O, Will CL, Bertram K, Urlaub H, Kastner B, Stark H, Lührmann R [Pubmed: 33243851] [DOI: 10.1126/science.abc3753] |
584.5 GB | 3.9 - 8.0 Å |
| 2021-11-01 |  |
Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
15.1 GB | — |
