The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-03-18 | Mycobacterium phage Che8 mutant capsid (gene 110 deletion) [8118 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM, White SJ | 2.2 TB | 2.39 Å | |
2024-03-18 | Cryo electron tomography image- and volume-series subtomograms of chloramphenicol-treated mycoplasma pneumoniae [multiple data sets in MRCS and MRC formats] | Powell B.M., Davis J.H. [Pubmed: 37398315] [DOI: 10.1101/2023.05.31.542975] |
788.5 GB | 26.0 Å | |
2024-03-18 | Unseeded Aβ(1-40) amyloid fibrils [4628 multi-frame micrographs composed of 918 frames each in EER format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
1.9 TB | 2.59 - 2.73 Å | |
2024-03-18 | Seeded Aβ(1-40) amyloid fibril [3018 multi-frame micrographs composed of 40 frames each in TIFF format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
550.2 GB | 2.97 Å | |
2024-03-18 | SJ25C1 Fab in complex with soluble CD19 [multiple data sets in TIFF format] | Meyerson JR, He C [Pubmed: 36867678] [DOI: 10.1126/sciimmunol.adf1426] |
3.8 TB | 3.4 Å | |
2024-03-18 | Cryo-EM structure of the human GBP1 dimer bound to GDP-AlF3 [5215 multi-frame micrographs composed of 50 frames each in TIFF format] | Kuhm TI, Jakobi AJ | 2.8 TB | 3.7 Å | |
2024-03-18 | Single particle cryo-EM structure of 14-aa-GS-RIG-I in complex with p3SLR30 [5375 multi-frame micrographs composed of 38 frames each in TIFF format] | Wang W, Pyle AM | 2.7 TB | 3.4 Å | |
2024-03-19 | Unveiling the ultrastructural landscape of extracellular matrix via lift-out cryo-FIBSEM and cryo-ET [multiple data sets in TIFF and MRC formats] | Zens B., Fäßler F., Hansen J.M., Hauschild R., Datler J., Hodirnau V.V., Zheden V., Alanko J., Sixt M., Schur F.K.M. [DOI: 10.1083/jcb.202309125] |
183.0 GB | — | |
2024-03-20 | Cryo-electron microscopy Structure of the Human Cannabinoid Receptor CB2-Gi Signaling Complex [multiple data sets in TIFF format] | Xing C, Zhuang Y, Xu TH, Feng Z, Zhou XE, Chen M, Wang L, Meng X, Xue Y, Wang J, Liu H, McGuire TF, Zhao G, Melcher K, Zhang C, Xu HE, Xie XQ [Pubmed: 32004460] [DOI: 10.1016/j.cell.2020.01.007] |
2.5 TB | 3.2 Å | |
2024-03-20 | Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex [592 micrographs in MRC format] | Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS [Pubmed: 34862384] [DOI: 10.1038/s41467-021-27397-z] |
52.0 GB | 7.29 Å | |
2024-03-20 | Single particle cryo-EM structure of RIG-I in complex with p3SLR14 [3531 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang W, Pyle AM | 1.1 TB | 3.8 Å | |
2024-03-21 | Single particle Cryo EM of the C-terminal half LRRK2 I2020T mutant bound to GZD-824 [8386 multi-frame micrographs composed of 50 frames each in EER format] | Villagran Suarez A, Leschziner A [Pubmed: 38039358] [DOI: 10.1126/sciadv.adk6191] |
7.4 TB | 3.1 Å | |
2024-03-21 | Cryo-EM of human cannabinoid receptor 1 bound to Fenofibrate with MiniGsq and Nb35 complex [multiple data sets in TIFF format] | Tang W, Wang T, Li F, Wang J [Pubmed: 38298116] [DOI: 10.1002/advs.202306311] |
1.1 TB | 2.88 - 3.05 Å | |
2024-03-21 | Taf15 amyloid filaments - Individual 3 [15621 multi-frame micrographs composed of 40 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SYPC, Garringer HJ, Newell KL, Vidal R, Apostolova L, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
2.5 TB | 2.63 Å | |
2024-03-22 | Structural basis for directional rotation of the Salmonella flagellum [39332 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.0 TB | 3.4 - 6.7 Å | |
2024-03-22 | Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 5-24 in complex with prefusion SARS-CoV-2 spike glycoprotein [9221 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L [Pubmed: 33789084] [DOI: 10.1016/j.chom.2021.03.005] |
2.4 TB | 3.9 Å | |
2024-03-25 | Cryo-EM micrographs of Tb ADAT2/3 bound to tRNA [6150 multi-frame micrographs composed of 80 frames each in TIFF format] | Dolce LG, Zimmer AA, Tengo L, Weis F, Rubio MAT, Alfonzo JD, Kowalinski E [Pubmed: 36347890] [DOI: 10.1038/s41467-022-34441-z] |
1.8 TB | 3.6 Å | |
2024-03-25 | Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format] | Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS [Pubmed: 37296134] [DOI: 10.1038/s41467-023-39140-x] |
738.4 GB | 2.2 Å | |
2024-03-26 | Single-Particle Cryo-EM of RNA Polymerase at Various Tilts [multiple data sets in TIFF, MRC and MRCS formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
487.4 GB | 3.1 Å | |
2024-03-26 | Cryo electron microscopy of Virus-like Particle based on PVY coat protein with dC40 deletion [6215 multi-frame micrographs composed of 40 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
5.8 TB | 3.09 - 3.5 Å | |
2024-03-26 | Cryo electron microscopy of assemblies based on truncated PVY coat protein [2862 multi-frame micrographs composed of 44 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
2.3 TB | 2.93 - 3.62 Å | |
2024-03-26 | cryo-EM 3D maps of the S. cerevisiae Yta7 bound to the reconstituted nucleosome [16532 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 36592926] [DOI: 10.1016/j.jbc.2022.102852] |
8.4 TB | 10.0 Å | |
2024-03-26 | Cryo-EM structure of mouse heavy-chain apoferritin [9846 multi-frame micrographs composed of 357 frames each in EER format] | Nazarov S.U., Myasnikov A.G., Mohammed I. | 963.4 GB | 1.09 Å | |
2024-03-26 | Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form [17529 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 37040767] [DOI: 10.1016/j.str.2023.03.010] |
7.6 TB | 3.5 Å | |
2024-03-26 | Cryo-EM micrographs of engineered encapsulin P3P4 [multiple data sets in MRC and MRCS formats] | Satler T, Jerala R | 69.3 GB | 3.1 Å |